Which cortical thickness measure? The value in the stats file or the values in the map prior to voxel-wise analysis?
On 10/10/2014 03:57 AM, Adam, Ruth wrote: > Hi, > > I would like to exclude areas which were incorrectly segmented and > could not be corrected after editing and re-running recon-all from the > cortical thickness measure. > Thank you again. > > Best, > ruthi > > > On 09 Oct 2014, at 19:57, Douglas Greve <gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu>> wrote: > >> What analysis? >> >> On 10/9/14 11:35 AM, Adam, Ruth wrote: >>> Hi all, >>> >>> Would be great is someone can tell me how to exclude >>> user-defined labels from the analysis. >>> >>> As far as I understand after creating all labels, mris_label2annot >>> with a custom colortable should be used. >>> -Is this correct or is there a more efficient way to exclude labels >>> form analysis? >>> -How can the new annotation file be incorporated with old annotation >>> files to mark what should be excluded/included in the analysis? >>> -Can a similar operation be done directly for labels created in >>> Tkmedit and volumes? >>> >>> Thank you very much in advance! >>> >>> Best, >>> ruthi >>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to >> whom it is >> addressed. If you believe this e-mail was sent to you in error and >> the e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to >> you in error >> but does not contain patient information, please contact the sender >> and properly >> dispose of the e-mail. > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
