yes, that's fine
On Tue, 4 Nov 2014, CHONNIKAN JONGKREANGKRAI wrote:

Dear Bruce,

Thank you for quick answer.
I can use .nii file instead of dicom, right?

Best Regards,
Ngoak


On 4 พ.ย. 2557, at 22:06, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote:

Hi Ngoaka
no, you don't need to set the origin of the image. Just point recon-all at a 
single slice from the correct dicom series (of a highres T1-weighted scan) with 
the

-i <full path and file name of dicom slice> -all -s <subject id that you pick>

and you should be good to go

cheers
Bruce

On Tue, 4 Nov 2014, CHONNIKAN JONGKREANGKRAI wrote:

Dear all,
I'm new on FreeSurfer.
I want to calculate cortical thickness, hippocampus volume from MRI images
(obtained from ADNI).
After installation, I tried recon-all. >> Only this process, can I obtain
cortical thickness and hippocampus volume?
And someone told me that I have to set origin of the image of each case
using SPM program.
I want to know that is it necessary?
Thank you​ for your kind attention
Best Regards,
Ngoak​
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