Hi there, I am receiving the following error during recon-all:
mritotal -verbose -debug -clobber -modeldir /usr/local/freesurfer/mni/bin/../share/mni_autoreg -protocol icbm transforms/tmp.talairach.7573/src.mnc transforms/talairach.auto.xfm Can't locate shellwords.pl in @INC (@INC contains: /usr/local/freesurfer/mni/bin/../lib/mni_autoreg /usr/local/freesurfer/mni/lib/perl5/5.8.5 /usr/local/lib64/perl5 /usr/local/share/perl5 /usr/lib64/perl5/vendor_perl /usr/share/perl5/vendor_perl /usr/lib64/perl5 /usr/share/perl5 .) at /usr/local/freesurfer/mni/bin/mritotal line 460. ERROR: mritotal failed, see transforms/talairach.log Any ideas?
/usr/local/freesurfer/subjects/KR/mri /usr/local/freesurfer/bin/talairach --i orig_nu.mgz --xfm transforms/talairach.auto.xfm $Id: talairach,v 1.7 2011/03/02 20:16:40 nicks Exp $ Linux localhost.localdomain 3.10.0-123.9.3.el7.x86_64 #1 SMP Thu Nov 6 15:06:03 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux Thu Nov 13 14:48:33 NZDT 2014 tmpdir is transforms/tmp.talairach.7573 /usr/local/freesurfer/subjects/KR/mri mri_convert orig_nu.mgz transforms/tmp.talairach.7573/src.mnc mri_convert orig_nu.mgz transforms/tmp.talairach.7573/src.mnc $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from orig_nu.mgz... TR=1430.00, TE=3.62, TI=1100.00, flip angle=15.00 i_ras = (-1, 7.45058e-09, 1.86265e-09) j_ras = (3.72529e-09, -5.96046e-08, -1) k_ras = (-1.49012e-08, 1, 0) writing to transforms/tmp.talairach.7573/src.mnc... [[email protected]:/usr/local/freesurfer/subjects/KR/mri] [2014-11-13 14:48:33] running: /usr/local/freesurfer/mni/bin/mritotal -verbose -debug -clobber -modeldir /usr/local/freesurfer/mni/bin/../share/mni_autoreg -protocol icbm transforms/tmp.talairach.7573/src.mnc transforms/talairach.auto.xfm
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