That is the right command line. What is the terminal output?
On 12/2/14 8:01 AM, wangzhiwei3233 wrote:
Hi Freesurfer experts,
I just want to try cluster level threshold by cluster size, but
not by mc simulation.
So I tried the command like : mri_surfcluster --in sig.nii.gz
--subject fsaverage --hemi lh --annot aparc --sign pos --minarea 50
--sum area50.pos.cluster.summary --o area50.pos.cluster.nii.gz --thmin 1.3
However, I found that the command did not set the non-cluster
vertices to zero.
The help of mri_surfcluster says that this command currently only
supports paint (or w) format for input and output. I converted the
sig.nii.gz to sig.w using
/ mri_surf2surf --s fsaverage --hemi lh --sval sig.nii.gz --tval sig.w
--trg_type paint./
But command mri_surfcluster could not read the paint file.
Could anyone help me?
Thanks!
Zhiwei
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