Dear free surfer experts.
I have two questions
I have created a larger number of labels on the FS_average surface and performed an FS_FAST analysis. The main goal is to obtain a functional connectome that contains all the possible correlations between 50 Rois.
The FS_fast analysis resulted in a 'fmcpr.sm5.subject.lh.nii.gz' file. I assume that this file has been mapped to the FS_average surface using spherical alignment. Therefore the vertex numbers reported in the FS_average label may correspond with the column position of the time course in the two dimensional lh.nii.gz for any given subject. I have tried to read the lh.ni.gz file into matlab. But due to its unconventional format matlab nifti readers crash. Do you have a matlab routine that allows to read this rather strange nifti format?
Is it a good idea to denoise time courses that have been obtained from task fMRI with your resting state pipeline if the goal is connectivity analysis.
Thanks in advance
Cheers Jan
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