Can you try just loading one surface? Such as:
freeview -f /media/seagate_external/subject/surf/lh.inflated
Does it load? What if:
mris_info /media/seagate_external/subject/surf/lh.inflated
or even just:
ls -l /media/seagate_external/subject/surf/lh.inflated
Does it show any error?
On 01/07/2015 12:13 PM, Hirsch, Gabriella wrote:
Hello,
I sent in a message yesterday but to no avail. I thought I would add a
little more info about the error message I'm receiving. I am trying to
view surfaces in 3D using Freeview on my own subject data via this
script from the Freesurfer website (replacing the subject name);
freeview -f
good_output/surf/lh.pial:annot=aparc.annot:name=pial_aparc:visible=0 \
good_output/surf/lh.inflated:overlay=lh.thickness:overlay_threshold=0.1,3::name=inflated_thickness:visible=0
\
good_output/surf/lh.inflated:visible=0 \
good_output/surf/lh.white:visible=0 \
good_output/surf/lh.pial
While Freeview loads correctly, I get an error message in the terminal
AND the GUI upon loading:
MRISread(/surf/lh.pial): could not open file
MRISread(/media/seagate_external/subject/surf/lh.inflated): could not
open file
MRISread(/media/seagate_external/subject/surf/lh.inflated): could not
open file
MRISread(/media/seagate_external/subject/surf/lh.white): could not
open file
MRISread(/media/seagate_external/subject/surf/lh.pial): could not open
file
I've checked all the files and each one exists in the correct path.
I've tried loading the subject data from both a drobo and from an
external hardrive with no luck - same errors. I've also gone through
the website/google but I can't seem to find a fix for this.
Any ideas on what's going on? Apologies for the repeat.
Thanks!
Gabriella
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