Dear FS experts,I am trying to run recon-all on data with analyze format. I am
aware that this is not the best format, however I do not have DICOM or NIFTI
original data as this is a very old data from University of North Carolina.
When I run import the images with recon-all -i. I am getting the following log
below. Do you advice to proceed with recon-all -all or do you there is a way I
could obtain the mat file that freesurfer is asking?Thank youPablorecon-all -i
30225.img -s 30225
mri_convert /home/0116442s/FS_test/30225.img
/home/0116442s/FS_test/SURF/30225/mri/orig/001.mgz
mri_convert /home/0116442s/FS_test/30225.img
/home/0116442s/FS_test/SURF/30225/mri/orig/001.mgz
-----------------------------------------------------------------INFO: could
not find /home/0116442s/FS_test/30225.mat file for direction cosine info.INFO:
use Analyze 7.5 hdr->hist.orient value: 1, coronal unflipped.INFO: if not
valid, please provide the information in /home/0116442s/FS_test/30225.mat
file-----------------------------------------------------------------$Id:
mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $reading from
/home/0116442s/FS_test/30225.img...TR=0.00, TE=0.00, TI=0.00, flip
angle=0.00i_ras = (-1, 0, 0)j_ras = (0, 0, 1)k_ras = (0, 1, 0)writing to
/home/0116442s/FS_test/SURF/30225/mri/orig/001.mgz...
#------------------------------------------
recon-all -s 30225 finished without error at Wed Feb 25 15:30:09 GMT 2015done
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