Hi Bishesh,
it is a know bug. in your recon-all find this block (should be in line
6148)
if ( ! $found_tpNid ) then
echo "ERROR: $tpNid is not in
${longbasedir}/${BaseSubjsListFname}"
echo ""
exit 1
endif
and replace the first line (if statement) with:
if ( ! $found_tpNid && ! $DoAddTp ) then
Best, Martin
On 02/25/2015 05:21 PM, Bishesh Khanal wrote:
It's 5.3.0. Here is the freesurfer version and my system info:
Build stamp: freesurfer-Linux-centos6_x86_
64-stable-pub-v5.3.0
RedHat release: Fedora release 19 (Schrödinger’s Cat)
Kernel info: Linux 3.14.22-100.fc19.x86_64 x86_64
On Wed, Feb 25, 2015 at 7:54 PM, Martin Reuter
<mreu...@nmr.mgh.harvard.edu <mailto:mreu...@nmr.mgh.harvard.edu>> wrote:
Hi Bishesh,
that is weird, it should add the time point to that file. What
version of FS are you using?
Best, Martin
On 02/25/2015 06:03 AM, Bishesh Khanal wrote:
Hi all,
I wanted to add a new timepoint in my longitudinal stream without
recreating the base template. recon-all -help shows that I should
be able to do that with:
recon-all -long <tpNsubjid> <longbasesubjid> -addtp -all
However, when I tried it I get an error.
Here is the error:
$recon-all -long miriad_189_AD_M_10SimulatedT1From01
miriad_189_AD_M_01_10 -addtp -all
ERROR: miriad_189_AD_M_10SimulatedT1From01 is not in
/home/bkhanal/works/freesurfer/freesurferSubjects/miriad_189_AD_M_01_10/base-tps
Since I'm using a new timepoint which was not used in creating
the base template it would of course not be in base-tps. Is
-addtp no having any effect here ?
The freesurfer version and my system info:
Build stamp: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0
RedHat release: Fedora release 19 (Schrödinger’s Cat)
Kernel info: Linux 3.14.22-100.fc19.x86_64 x86_64
Thanks,
Bishesh
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--
Dr. Martin Reuter
Instructor in Neurology
Harvard Medical School
Assistant in Neuroscience
Dept. of Radiology, Massachusetts General Hospital
Dept. of Neurology, Massachusetts General Hospital
Research Affiliate
Computer Science and Artificial Intelligence Lab,
Dept. of Electrical Engineering and Computer Science,
Massachusetts Institute of Technology
A.A.Martinos Center for Biomedical Imaging
149 Thirteenth Street, Suite 2301
Charlestown, MA 02129
Phone: +1-617-724-5652
Email:
mreu...@nmr.mgh.harvard.edu
reu...@mit.edu
Web : http://reuter.mit.edu
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