Trinh, Attempt to determine where libXp.so.6 was installed on your system after you installed it using yum. For example, on my system libXp.so.6 exists in directory "/usr/lib64". Once you determine the location where the library resides, add that directory to your LD_LIBRARY_PATH after you source freesurfer.
$> source $FREESURFER_HOME/SetUpFreeSurfer.sh $> export LD_LIBRARY_PATH=/usr/lib64:$LD_LIBRARY_PATH $> preproc-sess -s sess01 -fsd bold -stc up -surface fsaverage lhrh -fwhm 5 -per-run -Zeke On 06/22/2015 02:40 PM, Douglas Greve wrote: > I'm not sure what to tell you. Zeke, do you have any ideas? > Alternatively, you can just install afni on your machine. Once you > verify that the installation works, copy 3dvolreg from the installation. > > On 6/21/15 3:55 PM, Thục Trinh wrote: >> Hello Douglas, >> I already had *3dvolreg.afni* in */freesurfer/bin/*, but I still >> download the new one 3dvolreg.afni and replaced it in /freesurfer/bin. >> But the Error still remain the same. >> *3dvolreg.afni: error while loading shared libraries: libXp.so.6: >> cannot open shared object file: No such file or directory* >> *ERROR: 3dvolreg.afni* >> *Invalid null command.* >> >> >> 2015-06-19 16:04 GMT+07:00 Douglas Greve <gr...@nmr.mgh.harvard.edu >> <mailto:gr...@nmr.mgh.harvard.edu>>: >> >> >> See this thread >> >> http://www.mail-archive.com/freesurfer%40nmr.mgh.harvard.edu/msg37764.html >> >> >> >> >> On 6/17/15 5:59 PM, Thục Trinh wrote: >>> Hi freesurfer experts, >>> I am practicing on the fsfast tutorial data that were given at >>> Freesurfer website. >>> I run the command to do the pre-processing on the sess01 <*noproc*>. >>> *preproc-sess -s sess01 -fsd bold -stc up -surface fsaverage lhrh >>> -fwhm 5 -per-run* >>> it was unfinished and failed with the ERROR: >>> *3dvolreg.afni: error while loading shared libraries: libXp.so.6: >>> cannot open shared object file: No such file or directory* >>> *ERROR: 3dvolreg.afni* >>> *Invalid null command.* >>> so I run the command to install libXp.so.6 under root permission >>> *yum install libXp.so.6 *and completely installed. >>> I found the file *3dvolreg.afni *in the $FREESURFER_HOME/bin >>> But the ERROR still remained unfixed. >>> >>> Please help me with any suggestions to finish the preproc-sesss >>> Thankyou and have a nice day. >>> Trinh Tran >>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to >> whom it is >> addressed. If you believe this e-mail was sent to you in error and >> the e-mail >> contains patient information, please contact the Partners >> Compliance HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to >> you in error >> but does not contain patient information, please contact the >> sender and properly >> dispose of the e-mail. >> >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
