Hi Xixi,

Do you want to create a customized annotation file to load on a surface? or do you want to load multiple labels with different colors?

Best,
Ruopeng

On 06/16/2015 03:33 PM, Xixi Wang wrote:
Hi FreeSurfer users,

I’m trying to label different ROIs with corresponding decoding accuracies on inflated cortical surfaces. I’d like to create something like Figure 4B on http://freesurfer.net/fswiki/FreeSurferAnalysisPipelineOverview. Instead of using the default colormap, I’d like to generate my own colormap (i.e. grayscale or jet colormap) so that for each region, different color stands for different decoding accuracy value. I'm not sure whether I could do this in FreeSurfer, any advice would be greatly appreciated!

Best,
Xixi



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