sorry for the confusion I assure it is the correct download installed
Looking at the file again it does not have a '.bin' , but it is in the bin folder and is very small file 184 bytes the build-stamp.txt file say freesurfer-Darwin-lion-stable -pub-v5.3.0 On Thu, Jun 25, 2015 at 11:22 AM, Z K <[email protected]> wrote: > Although I can confirm the issue with surface files. Please wait a day > updating freeview. I will resolve the issue and email you and the list > once it is resolved. Hopefully within the day. > > -Zeke > > On 06/25/2015 02:20 PM, Z K wrote: > > Hmmmm. Im not really sure how to proceed because you should not have > > that file. What does your build-stamp.txt file contain? Twice I have > > tested by downloading the lion OSX version of freesurfer from this page: > > > > https://surfer.nmr.mgh.harvard.edu/fswiki/Download > > > > and never was a file called "freeview.bin" part of the installation. > > Perhaps you could consider completely removing the current installation > > and re-install? making absolutely sure you are using > > freesurfer-Darwin-lion-stable-pub-v5.3.0.dmg > > > > Once that is complete you can update to the newst freeview. Download the > > following link > > ( > ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/freeview/lion/Freeview.zip > ), > > Double click it, and replace you $FREESURFER_HOME/Freeview file with the > > one in the zip file. > > > > -Zeke > > > > On 06/25/2015 01:39 PM, joseph veliz wrote: > >> Sorry that is an archive zip that i also downloaded > >> > >> The one installed is Freesurfer -Darwin -lion -stabel -pub-v5.3.0.dmg > >> > >> > >> > >> On Thu, Jun 25, 2015 at 10:36 AM, joseph veliz <[email protected] > >> <mailto:[email protected]>> wrote: > >> > >> Positive we downloaded Freesurfer -Darwin - lion -dev.tar.gz > >> > >> On Thu, Jun 25, 2015 at 9:04 AM, Z K <[email protected] > >> <mailto:[email protected]>> wrote: > >> > >> > >> > >> On 06/23/2015 04:52 PM, joseph veliz wrote: > >> > Hello, > >> > > >> > > >> > We are having issues installing Freeview on Macbook pro > (2015) > >> > > >> > 2.2 GHz, 16GB DDR3, OSX 10.9.4, Integrated 1.5 GB intel iris > pro graphic > >> > processing. > >> > > >> > Installing lastest Freesurfer and Freeview downloads of > Darwin lion v5.3.0. > >> > > >> > After installing Freesurfer , license and environment setup, > the only > >> > freeview found is in the bin folder and is named freeview.bin > >> > >> This doenst make sense because the OSX distribution of > >> freesurfer does > >> not contain a "freeview.bin" file. Only the linux distribution > >> contains > >> that file. Are you sure you didn't download and install the > >> linux build > >> on your OSX machine? > >> > >> > >> -Zeke > >> > >> > >> > > >> > Commands to open freeview did not work. > >> > > >> > Then I placed the seperately downloaded Freeview.app in the > >> > /application/freesurfer directory, then the command freeview > >> responded. > >> > > >> > We don't know if we are putting the Freeview.app in the > >> correct directory? > >> > > >> > When opening freeview; > >> > > >> > Volumes are loading fine, but when a Surface is loaded the > >> program > >> > quits, giving error message. > >> > > >> > I am thinking the integrated graphics could be the issue > >> (uses computers > >> > RAM). Reading the freesurfer Requirments wiki, > >> > Graphics card: 3D graphics card with its own graphics > memory & > >> > accelerated OpenGL drivers. Could this be the issue even > >> though the > >> > macbook has 16GB DDR3 to spare? > >> > > >> > Also I don't think I am placing the Freeview.app in the > >> correct directory? > >> > > >> > Both gui and script attempts fail loading Surfaces and > return > >> error > >> > > >> > 2015-06-23 12:43:29.660 Freeview[1855:303] modalSession has > >> been exited > >> > prematurely - check for a reentrant call to endModalSession: > >> > dyld: lazy symbol binding failed: Symbol not found: > >> ___emutls_get_address > >> > Referenced from: > >> > > >> > /Applications/freesurfer/Freeview.app/Contents/MacOS/../Frameworks/libgomp.1.dylib > >> > Expected in: /usr/lib/libSystem.B.dylib > >> > > >> > dyld: Symbol not found: ___emutls_get_address > >> > Referenced from: > >> > > >> > /Applications/freesurfer/Freeview.app/Contents/MacOS/../Frameworks/libgomp.1.dylib > >> > Expected in: /usr/lib/libSystem.B.dylib > >> > > >> > [0]PETSC ERROR: > >> > > >> > ------------------------------------------------------------------------ > >> > [0]PETSC ERROR: Caught signal number 5 TRAP > >> > [0]PETSC ERROR: Try option -start_in_debugger or > >> -on_error_attach_debugger > >> > [0]PETSC ERROR: or see > >> > > >> > http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Signal[0]PETSC > >> > ERROR: or try http://valgrind.org on linux or man > libgmalloc > >> on Apple to > >> > find memory corruption errors > >> > [0]PETSC ERROR: configure using --with-debugging=yes, > >> recompile, link, > >> > and run > >> > [0]PETSC ERROR: to get more information on the crash. > >> > [0]PETSC ERROR: --------------------- Error Message > >> > ------------------------------------ > >> > [0]PETSC ERROR: Signal received! > >> > [0]PETSC ERROR: > >> > > >> > ------------------------------------------------------------------------ > >> > [0]PETSC ERROR: Petsc Release Version 2.3.3, Patch 13, Thu > May 15 > >> > 17:29:26 CDT 2008 HG revision: > >> 4466c6289a0922df26e20626fd4a0b4dd03c8124 > >> > [0]PETSC ERROR: See docs/changes/index.html for recent > updates. > >> > [0]PETSC ERROR: See docs/faq.html for hints about trouble > >> shooting. > >> > [0]PETSC ERROR: See docs/index.html for manual pages. > >> > [0]PETSC ERROR: > >> > > >> > ------------------------------------------------------------------------ > >> > [0]PETSC ERROR: Unknown Name on a darwin12. named > >> > fmris-MacBook-Pro.local by Dopamine Tue Jun 23 12:40:59 2015 > >> > [0]PETSC ERROR: Libraries linked from > >> > > >> > /usr/pubsw/packages/petsc/2.3.3-p13-64b/src/petsc-2.3.3-p13/lib/darwin12.2.0-c-opt > >> > [0]PETSC ERROR: Configure run at Mon Dec 17 15:29:35 2012 > >> > [0]PETSC ERROR: Configure options --with-debugging=no > >> --with-cc=gcc > >> > --with-fc=0 --download-f-blas-lapack=0 --download-mpich=1 > >> --with-mpi=1 > >> > --with-x=0 --with-gnu-copyright-code=0 --with-shared=0 > >> COPTFLAGS=-O3 > >> > CXXOPTFLAGS=-O3 FOPTFLAGS=-O3 > >> > [0]PETSC ERROR: > >> > > >> > ------------------------------------------------------------------------ > >> > [0]PETSC ERROR: User provided function() line 0 in unknown > >> directory > >> > unknown file > >> > [unset]: aborting job: > >> > application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0 > >> > > >> > > >> > > >> > Any help or comments are much appreciated > >> > > >> > Thank you so much, > >> > > >> > Jospeh Veliz > >> > > >> > > >> > _______________________________________________ > >> > Freesurfer mailing list > >> > [email protected] > >> <mailto:[email protected]> > >> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >> > > >> _______________________________________________ > >> Freesurfer mailing list > >> [email protected] > >> <mailto:[email protected]> > >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >> > >> > >> The information in this e-mail is intended only for the person > >> to whom it is > >> addressed. If you believe this e-mail was sent to you in error > >> and the e-mail > >> contains patient information, please contact the Partners > >> Compliance HelpLine at > >> http://www.partners.org/complianceline . If the e-mail was > sent > >> to you in error > >> but does not contain patient information, please contact the > >> sender and properly > >> dispose of the e-mail. > >> > >> > >> > >> > >> > >> _______________________________________________ > >> Freesurfer mailing list > >> [email protected] > >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >> > > _______________________________________________ > > Freesurfer mailing list > > [email protected] > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >
_______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
