hmmm, that could be a problem, although the surfaces look pretty good, so maybe not. Try V6 beta and see if it still happens. Or upload the subject and we will try it out
cheers Bruce On Fri, 19 Jun 2015, Antonin Skoch wrote: > Dear FreeSurfer experts, > > I encountered possible bug in FLAIR intensity normalization in several > subjects. > See attached screenshots with FLAIR.prenorm.mgz and FLAIR.mgz files. The > "normal intensity" pixels in FLAIR.mgz have intensity around 100, whereas > bright pixels (see FLAIR_after_normalization2.png file) have intensities > above 1000. There are several pixels outside head (seen in > FLAIR_normalization2.png file) with value 32767. > > Regards, > > Antonin Skoch > > _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
