Hi there, I am using Freesurfer in children which means lots of manual editing. I got very nice results with doing the recommended reconstruction (https://surfer.nmr.mgh.harvard.edu/fswiki/RecommendedReconstruction) . However, I got a problem with the volumes: Gray Matter and White Matter:
When I want to check the segmentation, which overlay do I have to choose for visual check? As WM and GM are calculated from both, surface-based volume calculations and voxel counts (http://surfer.nmr.mgh.harvard.edu/fswiki/MorphometryStats), I am not sure if I have to even edit bad segmentation (tkmedit -aseg). Is there tutorial for it? I only found the following: http://surfer.nmr.mgh.harvard.edu/fswiki/TkMeditGuide/TkMeditWorkingWithData/TkMeditSegmentations But there I cannot see which kind of failure have to be corrected. Cheers, Kristina _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
