Hi Doug, I solved the problem by using: bbregister --s subject --mov func_denoised/vol0000.nii --bold --init-spm --reg register.dat
mri_label2vol --label mask.label --reg register.dat --temp func_denoised/vol0000.nii --o mask.nii Best regards, Amirhossein Manzouri On Mon, Jul 27, 2015 at 7:30 PM, Douglas N Greve <gr...@nmr.mgh.harvard.edu> wrote: > What are the two T1 images? The command line below will take a label in > 152 space and transfer it to mni305 space. I'm not sure what you are > actually trying to achieve. > doug > > On 07/23/2015 10:44 AM, amirhossein manzouri wrote: > > Hi, > > I found group differences based on T1 images with 8 channel coil in > > QDEC and for fMRI in SPM I have used T1 images from 32 channel coil > > for the same subjects . Now I want to use the regions that I found in > > QDEC for fMRI analysis . Would you please let me know how can I > > transfer the labels between two T1 images in a way that I end up in > > the same regions. I am using the following now but the coordinates are > > not correct in the T1-32 ch: > > > > mri_label2vol --label 1001_1/label/lh.transversetemporal.label --reg > > ../../average/mni152.register.dat --temp > > /Applications/spm8/canonical/avg152T1.nii --o lh.transversetemp_1001.nii > > > > > > > > Best regard > > s > > > > Amirhossein Manzouri > > > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. >
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