I ran it but it seems to have encountered the same error... The fordoug.log
file is attached.
Cheers, Clara
----- Ursprüngliche Mail -----
Von: "Douglas Greve" <gr...@nmr.mgh.harvard.edu>
An: freesurfer@nmr.mgh.harvard.edu
Gesendet: Montag, 3. August 2015 17:16:18
Betreff: Re: [Freesurfer] cannot find qdec file
can you run
mris_preproc --debug --qdec-long /scr/etsch2/kids/ct/qdec/long.qdec.table.dat
--target 7kids_template_sc1 --hemi lh --meas thickness --out
/scr/etsch2/kids/ct/qdec/lh.thickness.mgh |& tee fordoug.log
and send me fordoug.log ?
On 8/3/15 10:38 AM, Clara Kühn wrote:
the command line is this:
mris_preproc --qdec-long /scr/etsch2/kids/ct/qdec/long.qdec.table.dat --target
7kids_template_sc1 --hemi lh --meas thickness --out
/scr/etsch2/kids/ct/qdec/lh.thickness.mgh
the terminal output is this:
nsubjects = 22
ERROR: cannot find /scr/etsch2/kids/ct/.long.
and the actual qdec file is attached.
Cheers, Clara
----- Ursprüngliche Mail -----
Von: "Douglas Greve" <gr...@nmr.mgh.harvard.edu> An:
freesurfer@nmr.mgh.harvard.edu Gesendet: Montag, 3. August 2015 16:35:24
Betreff: Re: [Freesurfer] cannot find qdec file
Can you send your command line, full terminal output, and your
long.qdec.table.dat file?
On 8/3/15 10:31 AM, Clara Kühn wrote:
ok, it can only access the file if I type
ls /scr/etsch2/kids/ct/qdec/long.qdec.table.dat (so with the forward slash)
but if I then use that path for the mris_preproc command I get
nsubjects = 22
ERROR: cannot find /scr/etsch2/kids/ct/.long.
----- Ursprüngliche Mail -----
Von: "Douglas Greve" <gr...@nmr.mgh.harvard.edu> An:
freesurfer@nmr.mgh.harvard.edu Gesendet: Montag, 3. August 2015 16:23:48
Betreff: Re: [Freesurfer] cannot find qdec file
that is probably not the full path. Try typing
ls scr/etsch2/kids/ct/qdec/long.qdec.table.dat
If it says it cannot find the file, then it is not the full path. Maybe
you need a forward slash (ie, "/") in the beginning?
On 8/3/15 10:18 AM, Clara Kühn wrote:
then I get the error ERROR: cannot find
scr/etsch2/kids/ct/qdec/long.qdec.table.dat
I had tried that. Sorry, no luck with that.
----- Ursprüngliche Mail -----
Von: "Douglas Greve" <gr...@nmr.mgh.harvard.edu> An:
freesurfer@nmr.mgh.harvard.edu Gesendet: Montag, 3. August 2015 16:16:58
Betreff: Re: [Freesurfer] cannot find qdec file
you have to give it the entire path to the file
On 8/3/15 10:14 AM, Clara Kühn wrote:
Dear FS-experts,
I want to analyze my longitudinal data with your suggested LME models and am
therefore following the walkthrough by J. Bernal. I get an error though very
early on when using the command
mris_preproc --qdec-long qdec/long.qdec.table.dat --target 7kids_template_sc1
--hemi lh --meas thickness --out qdec/lh.thickness.mgh
It always says
ERROR: cannot find qdec/long.qdec.table.dat
Yes, the walkthrough asks for an input file named just qdec.table.dat, but I
haven't got that. So far in the longitudinal stream there are
long.qdec.table.dat and cross.qdec.table.dat files but no simple qdec.table.dat
files. So I figured I'd use the long.qdec file because FS needs to get the
information about the long timepoints.
But it cannot find the file, even though I see it. I've also tried copying the
long.qdec file and naming it qdec.table.dat but it still doesn't find it.
The entire path to the file is scr/etsch2/kids/ct/qdec/long.qdec.table.dat and
my SUBJECTS_DIR is scr/etsch2/kids/ct
Can you help me see what I'm missing?
Thanks a lot in advance,
Clara
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https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in
this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine
at http://www.partners.org/complianceline . If the e-mail was sent to you in
error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
_______________________________________________
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu
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_______________________________________________
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
set echo = 1 ;
set debug = 1 ;
set debug = 1
breaksw
breaksw
end
end
while ( $#argv != 0 )
while ( 10 != 0 )
set flag = $argv[1] ; shift ;
set flag = --qdec-long
shift
switch ( $flag )
switch ( --qdec-long )
if ( $#argv == 0 ) goto arg1err ;
if ( 9 == 0 ) goto arg1err
set fsgdf = $argv[1] ; shift ;
set fsgdf = /scr/etsch2/kids/ct/qdec/long.qdec.table.dat
shift
if ( ! -e $fsgdf ) then
if ( ! -e /scr/etsch2/kids/ct/qdec/long.qdec.table.dat ) then
set sl = `cat $fsgdf | awk '{if ($1 != "fsid" && substr($1,0,1) != "#") printf("%s.long.%s\n", $1, $2)}'` ;
set sl = `cat $fsgdf | awk '{if ($1 != "fsid" && substr($1,0,1) != "#") printf("%s.long.%s\n", $1, $2)}'`
awk {if ($1 != "fsid" && substr($1,0,1) != "#") printf("%s.long.%s\n", $1, $2)}
cat /scr/etsch2/kids/ct/qdec/long.qdec.table.dat
set subjlist = ( $subjlist $sl ) ;
set subjlist = ( AL3K_1.long.AL3K.base AL3K_2.long.AL3K.base AL3K_3.long.AL3K.base AM1K_1.long.AM1K.base AM1K_2.long.AM1K.base AM1K_3.long.AM1K.base BJ4K_1.long.BJ4K.base BJ4K_2.long.BJ4K.base BJ4K_3.long.BJ4K.base BJ8K_1.long.BJ8K.base BJ8K_2.long.BJ8K.base BJ8K_3.long.BJ8K.base BN2K_1.long.BN2K.base BN2K_2.long.BN2K.base BN2K_3.long.BN2K.base WL3K_1.long.WL3K.base WL3K_2.long.WL3K.base WL3K_3.long.WL3K.base ZF1K_1.long.ZF1K.base ZF1K_2.long.ZF1K.base ZF1K_3.long.ZF1K.base .long. )
breaksw
breaksw
end
end
while ( $#argv != 0 )
while ( 8 != 0 )
set flag = $argv[1] ; shift ;
set flag = --target
shift
switch ( $flag )
switch ( --target )
if ( $#argv == 0 ) goto arg1err ;
if ( 7 == 0 ) goto arg1err
set target = $argv[1] ; shift ;
set target = 7kids_template_sc1
shift
breaksw
breaksw
end
end
while ( $#argv != 0 )
while ( 6 != 0 )
set flag = $argv[1] ; shift ;
set flag = --hemi
shift
switch ( $flag )
switch ( --hemi )
if ( $#argv == 0 ) goto arg1err ;
if ( 5 == 0 ) goto arg1err
set srchemi = $argv[1] ; shift ;
set srchemi = lh
shift
set trghemi = $srchemi ;
set trghemi = lh
breaksw
breaksw
end
end
while ( $#argv != 0 )
while ( 4 != 0 )
set flag = $argv[1] ; shift ;
set flag = --meas
shift
switch ( $flag )
switch ( --meas )
if ( $#argv < 1 ) goto arg1err ;
if ( 3 < 1 ) goto arg1err
set meas = $argv[1] ; shift ;
set meas = thickness
shift
set srcsurf = 1 ;
set srcsurf = 1
set srcfmt = curv ;
set srcfmt = curv
set MeasIn = 1 ;
set MeasIn = 1
breaksw
breaksw
end
end
while ( $#argv != 0 )
while ( 2 != 0 )
set flag = $argv[1] ; shift ;
set flag = --out
shift
switch ( $flag )
switch ( --out )
if ( $#argv == 0 ) goto arg1err ;
if ( 1 == 0 ) goto arg1err
set outpath = $argv[1] ; shift ;
set outpath = /scr/etsch2/kids/ct/qdec/lh.thickness.mgh
shift
set outstem = `fname2stem $outpath`
set outstem = `fname2stem $outpath`
fname2stem /scr/etsch2/kids/ct/qdec/lh.thickness.mgh
if ( $status ) then
if ( 0 ) then
breaksw
breaksw
end
end
while ( $#argv != 0 )
while ( 0 != 0 )
goto parse_args_return ;
goto parse_args_return
goto handle_fsfast ;
goto handle_fsfast
if ( $#SessFile ) then
if ( 0 ) then
goto handle_fsfast_return ;
goto handle_fsfast_return
goto check_params ;
goto check_params
if ( $#subjlistfile && $#ivplist ) then
if ( 0 && 0 ) then
if ( $#subjlistfile && $#fsgdf ) then
if ( 0 && 1 ) then
if ( $#ivplist && $#fsgdf ) then
if ( 0 && 1 ) then
if ( $#subjlist == 0 ) then
if ( 22 == 0 ) then
if ( $#srchemi == 0 ) then
if ( 1 == 0 ) then
if ( $#trghemi == 0 ) then
if ( 1 == 0 ) then
if ( $#outpath == 0 && ! $CacheOutOnly ) then
if ( 1 == 0 && ! 0 ) then
if ( $#target == 0 ) then
if ( 1 == 0 ) then
if ( ! -e $SUBJECTS_DIR ) then
if ( ! -e /scr/etsch2/kids/ct ) then
if ( ! -e $SUBJECTS_DIR/$target ) then
if ( ! -e /scr/etsch2/kids/ct/7kids_template_sc1 ) then
if ( $srcsurf == 0 && $srcvol == 0 && $#sval == 0 ) then
if ( 1 == 0 && 0 == 0 && 0 == 0 ) then
if ( $srcsurf && $srcvol ) then
if ( 1 && 0 ) then
if ( $srcsurf && $#projfrac != 0 ) then
if ( 1 && 0 != 0 ) then
if ( $catmean && $catstd ) then
if ( 0 && 0 ) then
if ( $#meas && $#isplist ) then
if ( 1 && 0 ) then
if ( $MeasIn && $CacheIn ) then
if ( 1 && 0 ) then
if ( $#ivplist != 0 ) then
if ( 0 != 0 ) then
if ( $#isplist != 0 ) then
if ( 0 != 0 ) then
if ( $paireddiff && ! $DoXHemi ) then
if ( 0 && ! 0 ) then
if ( ! -e $SUBJECTS_DIR ) then
if ( ! -e /scr/etsch2/kids/ct ) then
if ( $DoXHemi ) then
if ( 0 ) then
echo "nsubjects = $#subjlist" ;
echo nsubjects = 22
nsubjects = 22
@ nthsubj = 1 ;
@ nthsubj = 1
foreach subj ( $subjlist )
foreach subj ( AL3K_1.long.AL3K.base AL3K_2.long.AL3K.base AL3K_3.long.AL3K.base AM1K_1.long.AM1K.base AM1K_2.long.AM1K.base AM1K_3.long.AM1K.base BJ4K_1.long.BJ4K.base BJ4K_2.long.BJ4K.base BJ4K_3.long.BJ4K.base BJ8K_1.long.BJ8K.base BJ8K_2.long.BJ8K.base BJ8K_3.long.BJ8K.base BN2K_1.long.BN2K.base BN2K_2.long.BN2K.base BN2K_3.long.BN2K.base WL3K_1.long.WL3K.base WL3K_2.long.WL3K.base WL3K_3.long.WL3K.base ZF1K_1.long.ZF1K.base ZF1K_2.long.ZF1K.base ZF1K_3.long.ZF1K.base .long. )
set subjpath = $SUBJECTS_DIR/$subj
set subjpath = /scr/etsch2/kids/ct/AL3K_1.long.AL3K.base
if ( ! -e $subjpath ) then
if ( ! -e /scr/etsch2/kids/ct/AL3K_1.long.AL3K.base ) then
if ( $#meas ) then
if ( 1 ) then
if ( ! $CacheIn ) set measpath = $subjpath/$surfdir/$srchemi.$meas
if ( ! 0 ) set measpath = /scr/etsch2/kids/ct/AL3K_1.long.AL3K.base/surf/lh.thickness
set measpath = /scr/etsch2/kids/ct/AL3K_1.long.AL3K.base/surf/lh.thickness
if ( $CacheIn ) set measpath = $subjpath/$surfdir/$srchemi.$meas.mgh
if ( 0 ) set measpath = /scr/etsch2/kids/ct/AL3K_1.long.AL3K.base/surf/lh.thickness.mgh
if ( ! -e $measpath ) then
if ( ! -e /scr/etsch2/kids/ct/AL3K_1.long.AL3K.base/surf/lh.thickness ) then
endif
endif
if ( $#ivplist != 0 ) then
if ( 0 != 0 ) then
@ nthsubj = $nthsubj + 1 ;
@ nthsubj = 1 + 1
end
end
set subjpath = $SUBJECTS_DIR/$subj
set subjpath = /scr/etsch2/kids/ct/AL3K_2.long.AL3K.base
if ( ! -e $subjpath ) then
if ( ! -e /scr/etsch2/kids/ct/AL3K_2.long.AL3K.base ) then
if ( $#meas ) then
if ( 1 ) then
if ( ! $CacheIn ) set measpath = $subjpath/$surfdir/$srchemi.$meas
if ( ! 0 ) set measpath = /scr/etsch2/kids/ct/AL3K_2.long.AL3K.base/surf/lh.thickness
set measpath = /scr/etsch2/kids/ct/AL3K_2.long.AL3K.base/surf/lh.thickness
if ( $CacheIn ) set measpath = $subjpath/$surfdir/$srchemi.$meas.mgh
if ( 0 ) set measpath = /scr/etsch2/kids/ct/AL3K_2.long.AL3K.base/surf/lh.thickness.mgh
if ( ! -e $measpath ) then
if ( ! -e /scr/etsch2/kids/ct/AL3K_2.long.AL3K.base/surf/lh.thickness ) then
endif
endif
if ( $#ivplist != 0 ) then
if ( 0 != 0 ) then
@ nthsubj = $nthsubj + 1 ;
@ nthsubj = 2 + 1
end
end
set subjpath = $SUBJECTS_DIR/$subj
set subjpath = /scr/etsch2/kids/ct/AL3K_3.long.AL3K.base
if ( ! -e $subjpath ) then
if ( ! -e /scr/etsch2/kids/ct/AL3K_3.long.AL3K.base ) then
if ( $#meas ) then
if ( 1 ) then
if ( ! $CacheIn ) set measpath = $subjpath/$surfdir/$srchemi.$meas
if ( ! 0 ) set measpath = /scr/etsch2/kids/ct/AL3K_3.long.AL3K.base/surf/lh.thickness
set measpath = /scr/etsch2/kids/ct/AL3K_3.long.AL3K.base/surf/lh.thickness
if ( $CacheIn ) set measpath = $subjpath/$surfdir/$srchemi.$meas.mgh
if ( 0 ) set measpath = /scr/etsch2/kids/ct/AL3K_3.long.AL3K.base/surf/lh.thickness.mgh
if ( ! -e $measpath ) then
if ( ! -e /scr/etsch2/kids/ct/AL3K_3.long.AL3K.base/surf/lh.thickness ) then
endif
endif
if ( $#ivplist != 0 ) then
if ( 0 != 0 ) then
@ nthsubj = $nthsubj + 1 ;
@ nthsubj = 3 + 1
end
end
set subjpath = $SUBJECTS_DIR/$subj
set subjpath = /scr/etsch2/kids/ct/AM1K_1.long.AM1K.base
if ( ! -e $subjpath ) then
if ( ! -e /scr/etsch2/kids/ct/AM1K_1.long.AM1K.base ) then
if ( $#meas ) then
if ( 1 ) then
if ( ! $CacheIn ) set measpath = $subjpath/$surfdir/$srchemi.$meas
if ( ! 0 ) set measpath = /scr/etsch2/kids/ct/AM1K_1.long.AM1K.base/surf/lh.thickness
set measpath = /scr/etsch2/kids/ct/AM1K_1.long.AM1K.base/surf/lh.thickness
if ( $CacheIn ) set measpath = $subjpath/$surfdir/$srchemi.$meas.mgh
if ( 0 ) set measpath = /scr/etsch2/kids/ct/AM1K_1.long.AM1K.base/surf/lh.thickness.mgh
if ( ! -e $measpath ) then
if ( ! -e /scr/etsch2/kids/ct/AM1K_1.long.AM1K.base/surf/lh.thickness ) then
endif
endif
if ( $#ivplist != 0 ) then
if ( 0 != 0 ) then
@ nthsubj = $nthsubj + 1 ;
@ nthsubj = 4 + 1
end
end
set subjpath = $SUBJECTS_DIR/$subj
set subjpath = /scr/etsch2/kids/ct/AM1K_2.long.AM1K.base
if ( ! -e $subjpath ) then
if ( ! -e /scr/etsch2/kids/ct/AM1K_2.long.AM1K.base ) then
if ( $#meas ) then
if ( 1 ) then
if ( ! $CacheIn ) set measpath = $subjpath/$surfdir/$srchemi.$meas
if ( ! 0 ) set measpath = /scr/etsch2/kids/ct/AM1K_2.long.AM1K.base/surf/lh.thickness
set measpath = /scr/etsch2/kids/ct/AM1K_2.long.AM1K.base/surf/lh.thickness
if ( $CacheIn ) set measpath = $subjpath/$surfdir/$srchemi.$meas.mgh
if ( 0 ) set measpath = /scr/etsch2/kids/ct/AM1K_2.long.AM1K.base/surf/lh.thickness.mgh
if ( ! -e $measpath ) then
if ( ! -e /scr/etsch2/kids/ct/AM1K_2.long.AM1K.base/surf/lh.thickness ) then
endif
endif
if ( $#ivplist != 0 ) then
if ( 0 != 0 ) then
@ nthsubj = $nthsubj + 1 ;
@ nthsubj = 5 + 1
end
end
set subjpath = $SUBJECTS_DIR/$subj
set subjpath = /scr/etsch2/kids/ct/AM1K_3.long.AM1K.base
if ( ! -e $subjpath ) then
if ( ! -e /scr/etsch2/kids/ct/AM1K_3.long.AM1K.base ) then
if ( $#meas ) then
if ( 1 ) then
if ( ! $CacheIn ) set measpath = $subjpath/$surfdir/$srchemi.$meas
if ( ! 0 ) set measpath = /scr/etsch2/kids/ct/AM1K_3.long.AM1K.base/surf/lh.thickness
set measpath = /scr/etsch2/kids/ct/AM1K_3.long.AM1K.base/surf/lh.thickness
if ( $CacheIn ) set measpath = $subjpath/$surfdir/$srchemi.$meas.mgh
if ( 0 ) set measpath = /scr/etsch2/kids/ct/AM1K_3.long.AM1K.base/surf/lh.thickness.mgh
if ( ! -e $measpath ) then
if ( ! -e /scr/etsch2/kids/ct/AM1K_3.long.AM1K.base/surf/lh.thickness ) then
endif
endif
if ( $#ivplist != 0 ) then
if ( 0 != 0 ) then
@ nthsubj = $nthsubj + 1 ;
@ nthsubj = 6 + 1
end
end
set subjpath = $SUBJECTS_DIR/$subj
set subjpath = /scr/etsch2/kids/ct/BJ4K_1.long.BJ4K.base
if ( ! -e $subjpath ) then
if ( ! -e /scr/etsch2/kids/ct/BJ4K_1.long.BJ4K.base ) then
if ( $#meas ) then
if ( 1 ) then
if ( ! $CacheIn ) set measpath = $subjpath/$surfdir/$srchemi.$meas
if ( ! 0 ) set measpath = /scr/etsch2/kids/ct/BJ4K_1.long.BJ4K.base/surf/lh.thickness
set measpath = /scr/etsch2/kids/ct/BJ4K_1.long.BJ4K.base/surf/lh.thickness
if ( $CacheIn ) set measpath = $subjpath/$surfdir/$srchemi.$meas.mgh
if ( 0 ) set measpath = /scr/etsch2/kids/ct/BJ4K_1.long.BJ4K.base/surf/lh.thickness.mgh
if ( ! -e $measpath ) then
if ( ! -e /scr/etsch2/kids/ct/BJ4K_1.long.BJ4K.base/surf/lh.thickness ) then
endif
endif
if ( $#ivplist != 0 ) then
if ( 0 != 0 ) then
@ nthsubj = $nthsubj + 1 ;
@ nthsubj = 7 + 1
end
end
set subjpath = $SUBJECTS_DIR/$subj
set subjpath = /scr/etsch2/kids/ct/BJ4K_2.long.BJ4K.base
if ( ! -e $subjpath ) then
if ( ! -e /scr/etsch2/kids/ct/BJ4K_2.long.BJ4K.base ) then
if ( $#meas ) then
if ( 1 ) then
if ( ! $CacheIn ) set measpath = $subjpath/$surfdir/$srchemi.$meas
if ( ! 0 ) set measpath = /scr/etsch2/kids/ct/BJ4K_2.long.BJ4K.base/surf/lh.thickness
set measpath = /scr/etsch2/kids/ct/BJ4K_2.long.BJ4K.base/surf/lh.thickness
if ( $CacheIn ) set measpath = $subjpath/$surfdir/$srchemi.$meas.mgh
if ( 0 ) set measpath = /scr/etsch2/kids/ct/BJ4K_2.long.BJ4K.base/surf/lh.thickness.mgh
if ( ! -e $measpath ) then
if ( ! -e /scr/etsch2/kids/ct/BJ4K_2.long.BJ4K.base/surf/lh.thickness ) then
endif
endif
if ( $#ivplist != 0 ) then
if ( 0 != 0 ) then
@ nthsubj = $nthsubj + 1 ;
@ nthsubj = 8 + 1
end
end
set subjpath = $SUBJECTS_DIR/$subj
set subjpath = /scr/etsch2/kids/ct/BJ4K_3.long.BJ4K.base
if ( ! -e $subjpath ) then
if ( ! -e /scr/etsch2/kids/ct/BJ4K_3.long.BJ4K.base ) then
if ( $#meas ) then
if ( 1 ) then
if ( ! $CacheIn ) set measpath = $subjpath/$surfdir/$srchemi.$meas
if ( ! 0 ) set measpath = /scr/etsch2/kids/ct/BJ4K_3.long.BJ4K.base/surf/lh.thickness
set measpath = /scr/etsch2/kids/ct/BJ4K_3.long.BJ4K.base/surf/lh.thickness
if ( $CacheIn ) set measpath = $subjpath/$surfdir/$srchemi.$meas.mgh
if ( 0 ) set measpath = /scr/etsch2/kids/ct/BJ4K_3.long.BJ4K.base/surf/lh.thickness.mgh
if ( ! -e $measpath ) then
if ( ! -e /scr/etsch2/kids/ct/BJ4K_3.long.BJ4K.base/surf/lh.thickness ) then
endif
endif
if ( $#ivplist != 0 ) then
if ( 0 != 0 ) then
@ nthsubj = $nthsubj + 1 ;
@ nthsubj = 9 + 1
end
end
set subjpath = $SUBJECTS_DIR/$subj
set subjpath = /scr/etsch2/kids/ct/BJ8K_1.long.BJ8K.base
if ( ! -e $subjpath ) then
if ( ! -e /scr/etsch2/kids/ct/BJ8K_1.long.BJ8K.base ) then
if ( $#meas ) then
if ( 1 ) then
if ( ! $CacheIn ) set measpath = $subjpath/$surfdir/$srchemi.$meas
if ( ! 0 ) set measpath = /scr/etsch2/kids/ct/BJ8K_1.long.BJ8K.base/surf/lh.thickness
set measpath = /scr/etsch2/kids/ct/BJ8K_1.long.BJ8K.base/surf/lh.thickness
if ( $CacheIn ) set measpath = $subjpath/$surfdir/$srchemi.$meas.mgh
if ( 0 ) set measpath = /scr/etsch2/kids/ct/BJ8K_1.long.BJ8K.base/surf/lh.thickness.mgh
if ( ! -e $measpath ) then
if ( ! -e /scr/etsch2/kids/ct/BJ8K_1.long.BJ8K.base/surf/lh.thickness ) then
endif
endif
if ( $#ivplist != 0 ) then
if ( 0 != 0 ) then
@ nthsubj = $nthsubj + 1 ;
@ nthsubj = 10 + 1
end
end
set subjpath = $SUBJECTS_DIR/$subj
set subjpath = /scr/etsch2/kids/ct/BJ8K_2.long.BJ8K.base
if ( ! -e $subjpath ) then
if ( ! -e /scr/etsch2/kids/ct/BJ8K_2.long.BJ8K.base ) then
if ( $#meas ) then
if ( 1 ) then
if ( ! $CacheIn ) set measpath = $subjpath/$surfdir/$srchemi.$meas
if ( ! 0 ) set measpath = /scr/etsch2/kids/ct/BJ8K_2.long.BJ8K.base/surf/lh.thickness
set measpath = /scr/etsch2/kids/ct/BJ8K_2.long.BJ8K.base/surf/lh.thickness
if ( $CacheIn ) set measpath = $subjpath/$surfdir/$srchemi.$meas.mgh
if ( 0 ) set measpath = /scr/etsch2/kids/ct/BJ8K_2.long.BJ8K.base/surf/lh.thickness.mgh
if ( ! -e $measpath ) then
if ( ! -e /scr/etsch2/kids/ct/BJ8K_2.long.BJ8K.base/surf/lh.thickness ) then
endif
endif
if ( $#ivplist != 0 ) then
if ( 0 != 0 ) then
@ nthsubj = $nthsubj + 1 ;
@ nthsubj = 11 + 1
end
end
set subjpath = $SUBJECTS_DIR/$subj
set subjpath = /scr/etsch2/kids/ct/BJ8K_3.long.BJ8K.base
if ( ! -e $subjpath ) then
if ( ! -e /scr/etsch2/kids/ct/BJ8K_3.long.BJ8K.base ) then
if ( $#meas ) then
if ( 1 ) then
if ( ! $CacheIn ) set measpath = $subjpath/$surfdir/$srchemi.$meas
if ( ! 0 ) set measpath = /scr/etsch2/kids/ct/BJ8K_3.long.BJ8K.base/surf/lh.thickness
set measpath = /scr/etsch2/kids/ct/BJ8K_3.long.BJ8K.base/surf/lh.thickness
if ( $CacheIn ) set measpath = $subjpath/$surfdir/$srchemi.$meas.mgh
if ( 0 ) set measpath = /scr/etsch2/kids/ct/BJ8K_3.long.BJ8K.base/surf/lh.thickness.mgh
if ( ! -e $measpath ) then
if ( ! -e /scr/etsch2/kids/ct/BJ8K_3.long.BJ8K.base/surf/lh.thickness ) then
endif
endif
if ( $#ivplist != 0 ) then
if ( 0 != 0 ) then
@ nthsubj = $nthsubj + 1 ;
@ nthsubj = 12 + 1
end
end
set subjpath = $SUBJECTS_DIR/$subj
set subjpath = /scr/etsch2/kids/ct/BN2K_1.long.BN2K.base
if ( ! -e $subjpath ) then
if ( ! -e /scr/etsch2/kids/ct/BN2K_1.long.BN2K.base ) then
if ( $#meas ) then
if ( 1 ) then
if ( ! $CacheIn ) set measpath = $subjpath/$surfdir/$srchemi.$meas
if ( ! 0 ) set measpath = /scr/etsch2/kids/ct/BN2K_1.long.BN2K.base/surf/lh.thickness
set measpath = /scr/etsch2/kids/ct/BN2K_1.long.BN2K.base/surf/lh.thickness
if ( $CacheIn ) set measpath = $subjpath/$surfdir/$srchemi.$meas.mgh
if ( 0 ) set measpath = /scr/etsch2/kids/ct/BN2K_1.long.BN2K.base/surf/lh.thickness.mgh
if ( ! -e $measpath ) then
if ( ! -e /scr/etsch2/kids/ct/BN2K_1.long.BN2K.base/surf/lh.thickness ) then
endif
endif
if ( $#ivplist != 0 ) then
if ( 0 != 0 ) then
@ nthsubj = $nthsubj + 1 ;
@ nthsubj = 13 + 1
end
end
set subjpath = $SUBJECTS_DIR/$subj
set subjpath = /scr/etsch2/kids/ct/BN2K_2.long.BN2K.base
if ( ! -e $subjpath ) then
if ( ! -e /scr/etsch2/kids/ct/BN2K_2.long.BN2K.base ) then
if ( $#meas ) then
if ( 1 ) then
if ( ! $CacheIn ) set measpath = $subjpath/$surfdir/$srchemi.$meas
if ( ! 0 ) set measpath = /scr/etsch2/kids/ct/BN2K_2.long.BN2K.base/surf/lh.thickness
set measpath = /scr/etsch2/kids/ct/BN2K_2.long.BN2K.base/surf/lh.thickness
if ( $CacheIn ) set measpath = $subjpath/$surfdir/$srchemi.$meas.mgh
if ( 0 ) set measpath = /scr/etsch2/kids/ct/BN2K_2.long.BN2K.base/surf/lh.thickness.mgh
if ( ! -e $measpath ) then
if ( ! -e /scr/etsch2/kids/ct/BN2K_2.long.BN2K.base/surf/lh.thickness ) then
endif
endif
if ( $#ivplist != 0 ) then
if ( 0 != 0 ) then
@ nthsubj = $nthsubj + 1 ;
@ nthsubj = 14 + 1
end
end
set subjpath = $SUBJECTS_DIR/$subj
set subjpath = /scr/etsch2/kids/ct/BN2K_3.long.BN2K.base
if ( ! -e $subjpath ) then
if ( ! -e /scr/etsch2/kids/ct/BN2K_3.long.BN2K.base ) then
if ( $#meas ) then
if ( 1 ) then
if ( ! $CacheIn ) set measpath = $subjpath/$surfdir/$srchemi.$meas
if ( ! 0 ) set measpath = /scr/etsch2/kids/ct/BN2K_3.long.BN2K.base/surf/lh.thickness
set measpath = /scr/etsch2/kids/ct/BN2K_3.long.BN2K.base/surf/lh.thickness
if ( $CacheIn ) set measpath = $subjpath/$surfdir/$srchemi.$meas.mgh
if ( 0 ) set measpath = /scr/etsch2/kids/ct/BN2K_3.long.BN2K.base/surf/lh.thickness.mgh
if ( ! -e $measpath ) then
if ( ! -e /scr/etsch2/kids/ct/BN2K_3.long.BN2K.base/surf/lh.thickness ) then
endif
endif
if ( $#ivplist != 0 ) then
if ( 0 != 0 ) then
@ nthsubj = $nthsubj + 1 ;
@ nthsubj = 15 + 1
end
end
set subjpath = $SUBJECTS_DIR/$subj
set subjpath = /scr/etsch2/kids/ct/WL3K_1.long.WL3K.base
if ( ! -e $subjpath ) then
if ( ! -e /scr/etsch2/kids/ct/WL3K_1.long.WL3K.base ) then
if ( $#meas ) then
if ( 1 ) then
if ( ! $CacheIn ) set measpath = $subjpath/$surfdir/$srchemi.$meas
if ( ! 0 ) set measpath = /scr/etsch2/kids/ct/WL3K_1.long.WL3K.base/surf/lh.thickness
set measpath = /scr/etsch2/kids/ct/WL3K_1.long.WL3K.base/surf/lh.thickness
if ( $CacheIn ) set measpath = $subjpath/$surfdir/$srchemi.$meas.mgh
if ( 0 ) set measpath = /scr/etsch2/kids/ct/WL3K_1.long.WL3K.base/surf/lh.thickness.mgh
if ( ! -e $measpath ) then
if ( ! -e /scr/etsch2/kids/ct/WL3K_1.long.WL3K.base/surf/lh.thickness ) then
endif
endif
if ( $#ivplist != 0 ) then
if ( 0 != 0 ) then
@ nthsubj = $nthsubj + 1 ;
@ nthsubj = 16 + 1
end
end
set subjpath = $SUBJECTS_DIR/$subj
set subjpath = /scr/etsch2/kids/ct/WL3K_2.long.WL3K.base
if ( ! -e $subjpath ) then
if ( ! -e /scr/etsch2/kids/ct/WL3K_2.long.WL3K.base ) then
if ( $#meas ) then
if ( 1 ) then
if ( ! $CacheIn ) set measpath = $subjpath/$surfdir/$srchemi.$meas
if ( ! 0 ) set measpath = /scr/etsch2/kids/ct/WL3K_2.long.WL3K.base/surf/lh.thickness
set measpath = /scr/etsch2/kids/ct/WL3K_2.long.WL3K.base/surf/lh.thickness
if ( $CacheIn ) set measpath = $subjpath/$surfdir/$srchemi.$meas.mgh
if ( 0 ) set measpath = /scr/etsch2/kids/ct/WL3K_2.long.WL3K.base/surf/lh.thickness.mgh
if ( ! -e $measpath ) then
if ( ! -e /scr/etsch2/kids/ct/WL3K_2.long.WL3K.base/surf/lh.thickness ) then
endif
endif
if ( $#ivplist != 0 ) then
if ( 0 != 0 ) then
@ nthsubj = $nthsubj + 1 ;
@ nthsubj = 17 + 1
end
end
set subjpath = $SUBJECTS_DIR/$subj
set subjpath = /scr/etsch2/kids/ct/WL3K_3.long.WL3K.base
if ( ! -e $subjpath ) then
if ( ! -e /scr/etsch2/kids/ct/WL3K_3.long.WL3K.base ) then
if ( $#meas ) then
if ( 1 ) then
if ( ! $CacheIn ) set measpath = $subjpath/$surfdir/$srchemi.$meas
if ( ! 0 ) set measpath = /scr/etsch2/kids/ct/WL3K_3.long.WL3K.base/surf/lh.thickness
set measpath = /scr/etsch2/kids/ct/WL3K_3.long.WL3K.base/surf/lh.thickness
if ( $CacheIn ) set measpath = $subjpath/$surfdir/$srchemi.$meas.mgh
if ( 0 ) set measpath = /scr/etsch2/kids/ct/WL3K_3.long.WL3K.base/surf/lh.thickness.mgh
if ( ! -e $measpath ) then
if ( ! -e /scr/etsch2/kids/ct/WL3K_3.long.WL3K.base/surf/lh.thickness ) then
endif
endif
if ( $#ivplist != 0 ) then
if ( 0 != 0 ) then
@ nthsubj = $nthsubj + 1 ;
@ nthsubj = 18 + 1
end
end
set subjpath = $SUBJECTS_DIR/$subj
set subjpath = /scr/etsch2/kids/ct/ZF1K_1.long.ZF1K.base
if ( ! -e $subjpath ) then
if ( ! -e /scr/etsch2/kids/ct/ZF1K_1.long.ZF1K.base ) then
if ( $#meas ) then
if ( 1 ) then
if ( ! $CacheIn ) set measpath = $subjpath/$surfdir/$srchemi.$meas
if ( ! 0 ) set measpath = /scr/etsch2/kids/ct/ZF1K_1.long.ZF1K.base/surf/lh.thickness
set measpath = /scr/etsch2/kids/ct/ZF1K_1.long.ZF1K.base/surf/lh.thickness
if ( $CacheIn ) set measpath = $subjpath/$surfdir/$srchemi.$meas.mgh
if ( 0 ) set measpath = /scr/etsch2/kids/ct/ZF1K_1.long.ZF1K.base/surf/lh.thickness.mgh
if ( ! -e $measpath ) then
if ( ! -e /scr/etsch2/kids/ct/ZF1K_1.long.ZF1K.base/surf/lh.thickness ) then
endif
endif
if ( $#ivplist != 0 ) then
if ( 0 != 0 ) then
@ nthsubj = $nthsubj + 1 ;
@ nthsubj = 19 + 1
end
end
set subjpath = $SUBJECTS_DIR/$subj
set subjpath = /scr/etsch2/kids/ct/ZF1K_2.long.ZF1K.base
if ( ! -e $subjpath ) then
if ( ! -e /scr/etsch2/kids/ct/ZF1K_2.long.ZF1K.base ) then
if ( $#meas ) then
if ( 1 ) then
if ( ! $CacheIn ) set measpath = $subjpath/$surfdir/$srchemi.$meas
if ( ! 0 ) set measpath = /scr/etsch2/kids/ct/ZF1K_2.long.ZF1K.base/surf/lh.thickness
set measpath = /scr/etsch2/kids/ct/ZF1K_2.long.ZF1K.base/surf/lh.thickness
if ( $CacheIn ) set measpath = $subjpath/$surfdir/$srchemi.$meas.mgh
if ( 0 ) set measpath = /scr/etsch2/kids/ct/ZF1K_2.long.ZF1K.base/surf/lh.thickness.mgh
if ( ! -e $measpath ) then
if ( ! -e /scr/etsch2/kids/ct/ZF1K_2.long.ZF1K.base/surf/lh.thickness ) then
endif
endif
if ( $#ivplist != 0 ) then
if ( 0 != 0 ) then
@ nthsubj = $nthsubj + 1 ;
@ nthsubj = 20 + 1
end
end
set subjpath = $SUBJECTS_DIR/$subj
set subjpath = /scr/etsch2/kids/ct/ZF1K_3.long.ZF1K.base
if ( ! -e $subjpath ) then
if ( ! -e /scr/etsch2/kids/ct/ZF1K_3.long.ZF1K.base ) then
if ( $#meas ) then
if ( 1 ) then
if ( ! $CacheIn ) set measpath = $subjpath/$surfdir/$srchemi.$meas
if ( ! 0 ) set measpath = /scr/etsch2/kids/ct/ZF1K_3.long.ZF1K.base/surf/lh.thickness
set measpath = /scr/etsch2/kids/ct/ZF1K_3.long.ZF1K.base/surf/lh.thickness
if ( $CacheIn ) set measpath = $subjpath/$surfdir/$srchemi.$meas.mgh
if ( 0 ) set measpath = /scr/etsch2/kids/ct/ZF1K_3.long.ZF1K.base/surf/lh.thickness.mgh
if ( ! -e $measpath ) then
if ( ! -e /scr/etsch2/kids/ct/ZF1K_3.long.ZF1K.base/surf/lh.thickness ) then
endif
endif
if ( $#ivplist != 0 ) then
if ( 0 != 0 ) then
@ nthsubj = $nthsubj + 1 ;
@ nthsubj = 21 + 1
end
end
set subjpath = $SUBJECTS_DIR/$subj
set subjpath = /scr/etsch2/kids/ct/.long.
if ( ! -e $subjpath ) then
if ( ! -e /scr/etsch2/kids/ct/.long. ) then
echo "ERROR: cannot find $subjpath"
echo ERROR: cannot find /scr/etsch2/kids/ct/.long.
ERROR: cannot find /scr/etsch2/kids/ct/.long.
exit 1 ;
exit 1
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