Dear FreeSurfer experts, I have finished processing a group of brains MR images collected at 7T scanner using freesurfer 5.3.0 (Ubuntu 64 bits machine).
However, we need to get the cortical parcellation based on functional network connectivity. So I have downloaded the Atlas data (Yeo_JNeurophysiol11_FreeSurfer) to use it for the parcellation but I have few questions which I hope you will be able to help me on. 1- Do I need to repeat the "recon-all" process? 2- If yes, how can I change the default Atlas that freesurfer uses? 3- If no, what can I do to get the cortical parcellation based on finctional networks from our processed data? 4- At the end, shall I use the usual commands to extract the volumes, thicknesses ...etc? Many thanks for your help in advance. Ali -- *Ali M. Al-Radaideh. PhDHead of Department of Medical ImagingVice Dean of the Faculty of Allied Health SciencesThe Hashemite University, Zarqa, JordanW.phone +962 5 3903333 ext.5422, 5355, 5364Email: ali.radai...@hu.edu.jo <ali.radai...@hu.edu.jo>* *webpage: http://staff.hu.edu.jo/Default.aspx?id=ABZUPDzYeqM= <http://staff.hu.edu.jo/Default.aspx?id=ABZUPDzYeqM=>*
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