Hi Freesurfer experts, I'm trying to concatenate subjects using the command
isxconcat-sess -d $SUBJECTS_DIR -sf /cluster/roffman/users/Stable5_PerRun/Subject_Files/TEST -analysis SIRP_LoadRegression_Stable5_072915 -c Cond2vFix -hemis -o /cluster/roffman/users/STable5_PerRun/Analyses_GDD/GDD_All/100_GDD_92Adults_8Adolescents/TEST I'm receiving the error ERROR: cannot find /autofs/cluster/roffman/users/Stable5_PerRun/GDDA147/bold/register.dof6.dat I have register.dof6.dat in my run folders, but not in the general bold folder. I know that I can create a register.dof6.dat file in my bold folder if I run registration on my subjects -per-session. However, I want my subjects to stay preprocessed and registered -per-run. The analysis used in the isxconcat-sess command is also specified to be -per-run. The command I used to make it was mkanalysis-sess -analysis SIRP_LoadRegression_Stable5_072915 -TR 2 -paradigm slopepar -event-related -fsd bold -runlistfile runlistfile -tpef tpef_1.5mm.txt -native -timewindow 20 -TER 2 -nconditions 9 -gammafit 2.25 1.25 -refeventdur 2 -fwhm 5 -per-run Is there a way to specify in the concatenation command that my subjects are registered -per-run, and that the command should not look in the bold folder for the register.dof6.dat file, but instead in the run folders? Thanks, Anais _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
