Yes, they are 2 separate atlases. The references are on the FS wiki.

The "ctab" files are colortable files, so I believe the "25 100 40 0" are the 
RGB + transparency/opacity

________________________________________
From: [email protected] 
[[email protected]] on behalf of chenhf_uestc 
[[email protected]]
Sent: Tuesday, September 29, 2015 10:59
To: freesurfer
Subject: [Freesurfer] Questions about the files of lh.aparc.stats and   
lh.aparc.DKTatlas40.stats

Dear Freesurfer experts,

In the stats folder of subject in the SUBJECTS_DIR, I found the files of 
lh.aparc.DKTatlas40.stats and lh.aparc.stats. Are there statistical results 
belong to two different atlas? Because the values and brain regions are 
different in these two files.

In these two files, I found the command "mris_anatomical_stats -mgz -cortex 
../label/lh.cortex.label -f ../stats/lh.aparc.stats -b -a 
../label/lh.aparc.annot -c ../label/aparc.annot.ctab NC058 lh white" and 
"mris_anatomical_stats -mgz -cortex ../label/lh.cortex.label -f 
../stats/lh.aparc.DKTatlas40.stats -b -a ../label/lh.aparc.DKTatlas40.annot -c 
../label/aparc.annot.DKTatlas40.ctab NC058 lh white".

So, the atlases are the lh.aparc.annot and lh.aparc.DKTatlas40.stats, 
respectively. Right?
However, when I open these two atlas (attached aparc.annot.ctab and 
aparc.annot.DKTatlas40.ctab), I found the contents are same. In addition, I 
would really want to know that the value in the aparc.annot.ctab. For ex.   1  
bankssts 25 100  40    0; what does the values mean? 25 100 40 0

Best,
Feng

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