Can the recon-all for high resolution fMRI data be used in V6 beta freesurfer 
now? If so, how to use it?


> On Jun 25, 2015, at 13:36, Allison Moreau <[email protected]> 
> wrote:
> 
> Hi Falk and Thomas,
> 
> We are actually working on testing the -hires flag now for the v6 release. We 
> intend to release it with v6.
> 
> -Allison 
> 
> On 06/25/2015 07:09 AM, Falk Lüsebrink wrote:
>> Hi Thomas,
>>  
>> this looks like a really nice script and a lot better than my own. In the 
>> upcoming release of FreeSurfer v.6 my work-around probably is not needed 
>> anymore. However, I haven’t been able to have a look at the dev release yet 
>> and whether the standard recon-all features a flag to process high 
>> resolution data.
>>  
>> Best,
>> Falk
>>  
>> P.S. Following your instructions one will definitely become a coffee junkie. 
>> :D
>>  
>> Von: [email protected] 
>> <mailto:[email protected]> 
>> [mailto:[email protected] 
>> <mailto:[email protected]>] Im Auftrag von Emmerling 
>> Thomas (PSYCHOLOGY)
>> Gesendet: Mittwoch, 24. Juni 2015 14:35
>> An: [email protected] <mailto:[email protected]>
>> Betreff: [Freesurfer] recon-all pipeline for (sub-millimeter) 7T data
>>  
>> Hello!
>>  
>> I wrote a bash script some time ago to process data acquired at a 
>> sub-millimeter resolution following the nice wiki entry of Falk Lüsebrink 
>> (https://surfer.nmr.mgh.harvard.edu/fswiki/HiResRecon 
>> <https://surfer.nmr.mgh.harvard.edu/fswiki/HiResRecon>). I thought it might 
>> be helpful for others, too, as there are some questions about it in the 
>> mailing list archives, so here it is: 
>> https://github.com/thomastweets/freesurfer-7t-pipeline 
>> <https://github.com/thomastweets/freesurfer-7t-pipeline>. I am happy about 
>> any comments!
>>  
>> Best,
>> Thomas
>> 
>> 
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