you can find out where it is with which zcat On 11/03/2015 07:42 AM, Andrews, Derek wrote: > Hello Freesurfer Support Team, > > I have encountered an issue running recon-all –lgi that I believe is > due to a zcat issue on mac OSx where a .Z is added to the end of the > file name the resulting error looks like this… > > >> reading filled volume... > > zcat: can't stat: > /Users/dandrews/data/test/12011/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz > > (/Users/dandrews/data/test/12011/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz.Z): > > No such file or directory > > > Upon reading through some message boards it appears replacing zcat > with gzcat can solve this issue, however I am unsure where this > troublesome zcat command is (it does not appear in the mriscomputelgi > script). > > > Any suggestions or work throughs would be appreciated. > > > Best, Derek > > > > ------------------------------------------------------------------------ > > *Derek Sayre Andrews, MSc* > PhD Candidate > > The Sackler Institute for Translational Neurodevelopment > > Department of Forensic and Neurodevelopmental Sciences > > Institute of Psychiatry, Psychology & Neuroscience, King's College London > > Telephone: +44 (0)20 7848 5701 > Email: derek.andr...@kcl.ac.uk > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
