Can you run the following commands and tell me what happens?
cd /path/to/subject/surf
mris_calc -o lh.area.mid lh.area add lh.area.pial
On 11/12/15 11:39 AM, Nicole Zurcher wrote:
Hi Bruce/hi all,
Yes I am sure that I did not run out of disk space and I still get this
error message for mris_calc.
Do you have any suggestions?
Thanks in advance
Nicole
Message: 1
Date: Mon, 9 Nov 2015 12:34:24 -0500 (EST)
From: Bruce Fischl <fis...@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] recon-all error message
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Message-ID:
<alpine.lrh.2.20.1511091234090.3...@gate.nmr.mgh.harvard.edu>
Content-Type: text/plain; charset=US-ASCII; format=flowed
Hi Nicole
that's a very strange error. Are you sure that you didn't run out of disk
space?
Bruce
On Mon, 9 Nov 2015, Nicole Zurcher wrote:
Dear all,
One of my freesurfer recons is failing and I am not sure how to
troubleshoot.
This is the error message that I get at the end of the recon-all log
file:
mris_calc -o lh.area.mid lh.area add lh.area.pial
WARNING: # of slices=-106 in header - assuming 124...
read_signa([path]/surf/I.001): could not open file
No such file or directory
mris_calc: could not establish read access to 'lh.area'.
No such file or directory
and this is the command that appears in the recon-all.error
CMD mris_calc -o lh.area.mid lh.area add lh.area.pial
See attachment for entire recon-all log file. Any help is greatly
appreciated.
Thanks a lot
Nicole
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