On 12/15/2015 03:19 PM, Woo, Jonghye wrote: > I am trying to a brodmann mask using PALS B12 atlas in fsaverage. I used the > following command to create the volume from annotation file. I have two > questions associated with it. > mri_aparc2aseg --s my_subject --annot PALS_B12_Brodmann --o > PALS_B12_Brodmann_Mask.nii --annot-table lh_PALS_B12_table.txt > > 1. When I visualized the mask, it seems that the labels are not corresponding > to the regions (the annot-table is not working). Does anyone know this issue? Not sure what you mean. The ROIs are not lined up properly? Or when you click on an ROI the name is not correct? > 2. In this case, I only used lh table. Then do I need to use rh table again? > What should I to incorporate both lh and rh? Probably an issue with lh_PALS_B12_table.txt . Where did that come from?
> > Thank you in advance. > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
