Hi Will can you take the same images with freeview and send them along? Also: tell us a bit about your images. What format did they start in? Were they dicoms?
Bruce On Mon, 25 Jan 2016, will brown wrote: > Hi all, > After attempting recon-all I received the error "mritotal failed, see > transforms/talairach.log" etc which I understand may have something to do > with bad output from registration. I've checked orig.mgz which does look out > of line - the orientation is off so that it appears the subject has their > head tilted off to one side (see Image1.jpg). > > I have tried to fix this manually with the help of this tutorial: > > http://freesurfer.net/fswiki/FsTutorial/Talairach_freeview > > Hovever, the "movable" blurry image that I'm trying to line up with my > subjects image does not match the coronal, sagittal or horizontal views, > e.g. when I click "coronal" my subject is displayed correctly but the > movable image is displayed horizontally (see Image2.jpg and Image3.jpg). > > Am I missing something obvious? (and am I even on the right track given this > error?) > > Thanks in advance for any help. > > Cheers, > Will > > _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
