Hi Deniz - It seems that it finds the folders of the 2 time points, but
not the folder of the longitudinal base template. This is the template
that longitudinal recon-all creates in its 2nd processing step. In your
case, it would be
/data_august/Deniz/DTI_long/subjects/med_AhJa94
Does this exist?
a.y
On Thu, 4 Feb 2016, Gürsel, Deniz wrote:
Dear Tracula Experts,
I'm having trouble with longitudinal analysis using tracula. Just to try out, I
am
using one subject with 2 time points. I defined the parameters in dmrirc file
as:
set subjlist = (med_AhJa94_1 med_AhJa94_2)
set baselist =(med_AhJa94 med_AhJa94)
My subject folder which contains the longitudinal templates of reconstruction is
located as "/data_august/Deniz/DTI_long/subjects/med_AhJa94_1.long.med_AhJa94"
"/data_august/Deniz/DTI_long/subjects/med_AhJa94_2.long.med_AhJa94"
Tracula can't seem to find this subject folder, although I am providing the
correct
parameters for it. I get the error message when I ran trac-all -prep -c
dmrirc.long :
ERROR: cannot find /data_august/Deniz/DTI_long/subjects/med_AhJa94
I attached the trac-all.log and dmrirc files for your reference.
Thank you very much.
Best regards,
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