Hi, Thank you for your response. I just used the command you suggested to use by just a change in calling .ctab LUT file. I used the path: 002_S_0413/labels/aparc.annot.a2009s.ctab because I could not work by just calling aparc.annot.a2009s.ctab. It is strange that I created annot file for lh.G_and_S_paracentral.label, but it shows its name in tksurfer: G_and_S_frontomarg! I excluded the part --nhits too. So, what is your opinion?
Regards, Faezeh Vedaei On Tue, Mar 1, 2016 at 10:57 AM, Faeze Vedaei <faezeved...@gmail.com> wrote: > Hi, > > > Here is the text format of those files. > > Regards, > Faezeh Vedaei > > On Mon, Feb 29, 2016 at 5:30 PM, Faeze Vedaei <faezeved...@gmail.com> > wrote: > >> Hi >> >> Thank you so much for your response. I attached here three files >> including the command lines, LUT file , and the list of names I want to get >> and what the result is actually. I'd appreciate if you look at them and let >> me know what is wrong with that. >> >> Regards, >> Faezeh Vedaei >> >> On Mon, Feb 29, 2016 at 4:45 PM, Faeze Vedaei <faezeved...@gmail.com> >> wrote: >> >>> Hi, >>> >>> I checked again to arrange the labels in the order of LUT file, but the >>> result has not changed. Can you help me more how I can fix this problem? >>> Thank you so much for your time and help. >>> >>> Regards, >>> Faezeh Vedaei >>> >>> On Mon, Feb 29, 2016 at 3:01 PM, Faeze Vedaei <faezeved...@gmail.com> >>> wrote: >>> >>>> Hi, >>>> >>>> Thank you for your response. Yes, you are right. The names come from >>>> the color LUT file. But, the issue is that I chose the label files from >>>> that LUT file too. It meas the source that I chose the label files from and >>>> the source of the region's names in tksurfer are the same. The problem is >>>> just I do not have the label's names I merged to create annot file, in the >>>> tksurfer GUI. It shows another names of that list! So, what do you think >>>> about? What is the problem? >>>> >>>> Regards, >>>> Faezeh Vedaei >>>> >>>> On Mon, Feb 29, 2016 at 12:42 PM, Faeze Vedaei <faezeved...@gmail.com> >>>> wrote: >>>> >>>>> Hi Freesurfer experts, >>>>> >>>>> I have created an annotation file by several label files using >>>>> mris_label2annot command in Freesurfer. The problem is that when I open >>>>> this annot file in tksurfer and click on colored regions which >>>>> corresponded >>>>> to specific labels I had chosen them, I do not have their name on the >>>>> vertex information part at the bottom of tksurfer GUI. It shows very >>>>> different names for these regions. May you explains me what is the problem >>>>> I could not see the exact region's name as I have them for label files? >>>>> >>>>> Thanks, >>>>> Faezeh Vedaei >>>>> >>>> >>>> >>> >> >
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