oh duh! Sorry, wasn’t thinking clearly. Okay, I see how to generate the betas now. I don’t even need to mess with the mkcontrast-sess command. I just run selxavg3-sess with the -no-con-ok flag. With spmhrf 0 I generated a beta.nii.gz file with 85 betas in each vertex. With spmhrf 1 I generated a beta.nii.gz file with 97 betas in each vertex. With 12 conditions, 12 more betas is exactly right. So how do I know which of the betas is which? I looked through the files and couldn’t find any labels. I’m guessing the first twelve are the condition betas for "spmhrf 0". If so, for "spmhrf 1", is it arranged as:
1) c1 c2 c3…d1 d2 d3... or 2) c1 d1 c2 d2... (where d is the first derivative term) also, when I asked you earlier about implementing this procedure, I had suggested reading the betas, computing the Calhoun, then generating new beta.nii.gz files with the new betas replacing the original spmhrf0 betas and then continuing with the regular analysis stream but you said it would result in invalid p-values. Instead, you suggested: "I was just thinking you could load the beta into matlab, make the Calhoun computations on each condition, then compute the contrasts, then write out the new volume” can you expand on how one might “compute the contrasts” and “write out the new volume”? Thanks again for this help! Joe > On Mar 15, 2016, at 12:43, Douglas N Greve <gr...@nmr.mgh.harvard.edu> wrote: > > The setwdelay is an option for mkcontrast-sess (not mkanalysis-sess) > > On 03/13/2016 10:29 PM, Joseph Dien wrote: >> After a long break, back to this… >> >> My goal is still to get the betas for the first and maybe second spm >> hrf so I can calculate a Calhoun derivative boost measure. >> >> As a first step I ran: >> >> mkanalysis-sess -fsd bold -analysis RPA.sm05.lh -surface fsaverage lh >> -fwhm 5 -event-related -paradigm RPA1fix.par -nconditions 12 -spmhrf >> 1 -TR 2 -refeventdur .25 -polyfit 2 -per-run -force -nuisreg >> nuisreg.dat 6 -tpexclude tpexclude.dat -b0dc >> >> to use the SPM HRF with one derivative. >> >> Then: >> >> selxavg3-sess -sf sessidlistALL.dat -analysis RPA.sm05.lh >> >> I got the following error: >> >> ERROR: flac_evconw(): conVinc, Condition01 evrw dim mismatch >> This condition has 2 regressors, but evrm has 1 >> Struct contents reference from a non-struct array object. >> >> Error in flac_conmat (line 37) >> if(nthcon > length(flac.con)) >> >> Error in flac_customize (line 369) >> flacnew = flac_conmat(flacnew,nthcon); >> >> Error in fast_selxavg3 (line 65) >> flac0 = flac_customize(flac0); >> >>>> ------------------------------------------ >> ERROR: fast_selxavg3() failed\n >> >> This ran fine with spmhrf 0 >> >> based on your prior response below that: >> >> "This is what happens. If you want to use the derivatives, >> then you need to spec -setwdelay. When you run the command, it will >> prompt you >> for 3 values to use. If you spec 1 0 0, then it will be the same as the >> default. If you want to test only the first derivative, then >> you would spec 0 1 0. Note that the 3rd regressor is the 2nd >> derivative wrt time, not the first derivative wrt the dispersion >> parameter. You >> cannot get the Calhoun 2004 value using a contrast (it is non-linear).” >> >> I tried: >> >> mkanalysis-sess -fsd bold -analysis RPA.sm05.lh -surface fsaverage lh >> -fwhm 5 -event-related -paradigm RPA1fix.par -nconditions 12 -spmhrf >> 1 -TR 2 -refeventdur .25 -polyfit 2 -per-run -force -nuisreg >> nuisreg.dat 6 -tpexclude tpexclude.dat -b0dc -setwdelay >> >> but I just got the error: >> >> ERROR: Flag -setwdelay unrecognized. >> >> I also tried using the flag when setting up the contrasts but that >> didn’t work either. >> >> so not quite sure what I’m doing wrong. I had understood from your >> response below that the contrast weights didn’t need to be changed >> from the spmhrf 0 case but perhaps I misunderstood? >> >> any help would be welcome! >> >> Joe >> >>> On Jul 10, 2013, at 13:58, Douglas N Greve <gr...@nmr.mgh.harvard.edu >>> <mailto:gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>>> >>> wrote: >>> >>> >>> I was just thinking you could load the beta into matlab, make the >>> Calhoun computations on each condition, then compute the contrasts, then >>> write out the new volume >>> >>> >>> On 07/10/2013 01:40 PM, Joseph Dien wrote: >>>> Sounds good! >>>> >>>> Regarding creating a new volume and computing contrasts from it, what >>>> do you mean? I didn't follow that. >>>> >>>> Thanks! >>>> >>>> Joe >>>> >>>> >>>> On Jul 10, 2013, at 1:33 PM, Douglas N Greve >>>> <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> >>>> <mailto:gr...@nmr.mgh.harvard.edu >>>> <mailto:gr...@nmr.mgh.harvard.edu>><mailto:gr...@nmr.mgh.harvard.edu >>>> <mailto:gr...@nmr.mgh.harvard.edu>>> wrote: >>>> >>>>> >>>>> On 07/10/2013 01:29 PM, Joseph Dien wrote: >>>>>> Sorry, not following what you are suggesting? >>>>>> >>>>>> I want the second derivative for calculating the Calhoun et al 2004 >>>>>> derivative boost measure. >>>>>> My understanding is that to the extent that the BOLD signal deviates >>>>>> from the canonical hrf, the amplitude of the primary regressor will be >>>>>> attenuated and the variance will instead end up in the first and >>>>>> second derivatives (to the extent that they are able to accommodate >>>>>> the divergence). By using a Calhoun measure that incorporates both >>>>>> the first and second derivatives, in principle I'll have a BOLD >>>>>> measure that is more robust to deviations from the canonical hrf. >>>>> Sorry, it had been a while since I read that paper. I did not know that >>>>> they had a formulation that included the 2nd derivative. >>>>>> >>>>>> However, if the way FSFAST is calculating the second derivative >>>>>> regressor is resulting in loss of statistical power due to shared >>>>>> variance with the primary regressor, then it would be best to just not >>>>>> include it at all in the estimation step. >>>>> I don't know how much it will hurt the power. You'd have to look at the >>>>> efficiency. >>>>> doug >>>>> >>>>>> >>>>>> >>>>>> On Jul 10, 2013, at 1:21 PM, Douglas N Greve >>>>>> <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> >>>>>> <mailto:gr...@nmr.mgh.harvard.edu >>>>>> <mailto:gr...@nmr.mgh.harvard.edu>><mailto:gr...@nmr.mgh.harvard.edu >>>>>> <mailto:gr...@nmr.mgh.harvard.edu>> >>>>>> <mailto:gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>>> >>>>>> wrote: >>>>>> >>>>>>> >>>>>>> Why not just create a new volume and then compute contrasts from >>>>>>> the new >>>>>>> volume? What you are suggesting will work I think, but it leaves me a >>>>>>> little nervous. The p-values will be meaningless. >>>>>>> >>>>>>> >>>>>>> As for the 2nd derivative, I think it must be a numerical issue >>>>>>> (it is >>>>>>> not computed analytically). Why do you need the 2nd derivative? >>>>>>> >>>>>>> doug >>>>>>> >>>>>>> >>>>>>> >>>>>>> On 07/10/2013 12:47 PM, Joseph Dien wrote: >>>>>>>> I'm thinking of generating a modified beta.nii.gz file where the >>>>>>>> primary betas have been replaced with the Calhoun et al (2004) >>>>>>>> derivative boost measure. What do you think? Also, please note my >>>>>>>> question below about the second derivative as it is causing me >>>>>>>> concern >>>>>>>> about my analysis. Thanks! >>>>>>>> >>>>>>>> Joe >>>>>>>> >>>>>>>> >>>>>>>> On Jul 10, 2013, at 12:39 PM, Douglas N Greve >>>>>>>> <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> >>>>>>>> <mailto:gr...@nmr.mgh.harvard.edu >>>>>>>> <mailto:gr...@nmr.mgh.harvard.edu>><mailto:gr...@nmr.mgh.harvard.edu >>>>>>>> <mailto:gr...@nmr.mgh.harvard.edu>> >>>>>>>> <mailto:gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> >>>>>>>> <mailto:gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>>> >>>>>>>> wrote: >>>>>>>> >>>>>>>>> >>>>>>>>> I think that would work. You would need to change the time stamps >>>>>>>>> on the >>>>>>>>> .mat file in the analysis folder. When you re-run selxavg3-sess, it >>>>>>>>> will >>>>>>>>> see that the .mat files are newer than the beta and regenerate the >>>>>>>>> contrasts. But what are you planning to do the the beta file? It >>>>>>>>> sounds >>>>>>>>> like a potentially bad idea >>>>>>>>> >>>>>>>>> doug >>>>>>>>> >>>>>>>>> >>>>>>>>> On 07/09/2013 10:26 PM, Joseph Dien wrote: >>>>>>>>>> It looks as though selxavg3-sess generates the contrast >>>>>>>>>> analyses at >>>>>>>>>> the same time as the beta weights. Would it be possible to >>>>>>>>>> run selxavg3-sess once to obtain the beta weights, modify the >>>>>>>>>> beta.nii.gz file, and then rerun selxavg3-sess to obtain the >>>>>>>>>> contrast >>>>>>>>>> statistics using the modified beta weights? >>>>>>>>>> >>>>>>>>>> Joe >>>>>>>>>> >>>>>>>>>> On Jul 9, 2013, at 5:08 PM, Joseph Dien <jdie...@mac.com >>>>>>>>>> <mailto:jdie...@mac.com> >>>>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>>> wrote: >>>>>>>>>> >>>>>>>>>>> I tried correlations and the 2nd derivative is definitely not >>>>>>>>>>> orthogonal. >>>>>>>>>>> >>>>>>>>>>>>> corrcoef([X(1:207,4) X(1:207,5) X(1:207,6)]) >>>>>>>>>>> >>>>>>>>>>> ans = >>>>>>>>>>> >>>>>>>>>>> 1.0000 -0.0000 -0.5427 >>>>>>>>>>> -0.0000 1.0000 -0.0298 >>>>>>>>>>> -0.5427 -0.0298 1.0000 >>>>>>>>>>> >>>>>>>>>>> I looked at the regressors that SPM generates for the same data: >>>>>>>>>>> >>>>>>>>>>> ans = >>>>>>>>>>> >>>>>>>>>>> 1.0000 0.0436 0.1740 >>>>>>>>>>> 0.0436 1.0000 -0.0226 >>>>>>>>>>> 0.1740 -0.0226 1.0000 >>>>>>>>>>> >>>>>>>>>>> The first derivative is not as orthogonal but the second >>>>>>>>>>> derivative >>>>>>>>>>> was much more orthogonal. >>>>>>>>>>> Does this have to do with what you noted below about how the >>>>>>>>>>> second >>>>>>>>>>> derivative is being calculated? >>>>>>>>>>> So does this mean I should avoid the spmhrf 2 option entirely to >>>>>>>>>>> avoid loss of statistical power? >>>>>>>>>>> >>>>>>>>>>> Thanks for the help! >>>>>>>>>>> >>>>>>>>>>> Joe >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> On Jul 9, 2013, at 4:34 PM, Joseph Dien <jdie...@mac.com >>>>>>>>>>> <mailto:jdie...@mac.com> >>>>>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>>> wrote: >>>>>>>>>>> >>>>>>>>>>>> Thanks for the quick response! So if I wanted to use the >>>>>>>>>>>> Calhoun >>>>>>>>>>>> 2004 approach, I should be able to use the Steffener 2010 >>>>>>>>>>>> correction >>>>>>>>>>>> to address the violation of the assumption that the regressors >>>>>>>>>>>> were >>>>>>>>>>>> standardized and generate a new beta.nii.gz file where the >>>>>>>>>>>> primary >>>>>>>>>>>> beta values have been replaced with the Calhoun 2004 measure. >>>>>>>>>>>> Can I >>>>>>>>>>>> assume the three regressors are more or less orthogonal? I got >>>>>>>>>>>> non-zero numbers when I tried to test the assumption in the >>>>>>>>>>>> Xtmp.X >>>>>>>>>>>> variable >>>>>>>>>>>> >>>>>>>>>>>> sum(X(1:207,4).*X(1:207,5)) >>>>>>>>>>>> >>>>>>>>>>>> but not hugely non-zero so maybe just rounding errors? >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> On Jul 9, 2013, at 4:16 PM, Douglas N Greve >>>>>>>>>>>> <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> >>>>>>>>>>>> <mailto:gr...@nmr.mgh.harvard.edu >>>>>>>>>>>> <mailto:gr...@nmr.mgh.harvard.edu>><mailto:gr...@nmr.mgh.harvard.edu >>>>>>>>>>>> <mailto:gr...@nmr.mgh.harvard.edu>> >>>>>>>>>>>> <mailto:gr...@nmr.mgh.harvard.edu >>>>>>>>>>>> <mailto:gr...@nmr.mgh.harvard.edu>> >>>>>>>>>>>> <mailto:gr...@nmr.mgh.harvard.edu >>>>>>>>>>>> <mailto:gr...@nmr.mgh.harvard.edu>> >>>>>>>>>>>> <mailto:gr...@nmr.mgh.harvard.edu >>>>>>>>>>>> <mailto:gr...@nmr.mgh.harvard.edu>>> wrote: >>>>>>>>>>>> >>>>>>>>>>>>> >>>>>>>>>>>>> On 07/09/2013 04:11 PM, Joseph Dien wrote: >>>>>>>>>>>>>> Hi, >>>>>>>>>>>>>> I have a question about how mkcontrast-sess works. I ran an >>>>>>>>>>>>>> analysis using the mkanalysis-sess option spmhrf 2 so >>>>>>>>>>>>>> there are >>>>>>>>>>>>>> three >>>>>>>>>>>>>> regressors for each predictor, the primary, the latency, >>>>>>>>>>>>>> and the >>>>>>>>>>>>>> dispersion. When specifying the contrast weights for >>>>>>>>>>>>>> mkcontrast-sess, >>>>>>>>>>>>>> the documentation indicates that they are specified in terms >>>>>>>>>>>>>> of the >>>>>>>>>>>>>> conditions as numbered in the paradigm file, not the >>>>>>>>>>>>>> individual >>>>>>>>>>>>>> regressors. Furthermore there only appears to be one contrast >>>>>>>>>>>>>> value >>>>>>>>>>>>>> output for each contrast, not three. >>>>>>>>>>>>>> >>>>>>>>>>>>>> How are the three regressors being handled? I can think of >>>>>>>>>>>>>> several >>>>>>>>>>>>>> scenarios: >>>>>>>>>>>>>> >>>>>>>>>>>>>> 1) the contrast weights are not actually in terms of >>>>>>>>>>>>>> conditions (the >>>>>>>>>>>>>> documentation is incorrect), they are actually in terms of the >>>>>>>>>>>>>> regressors (so contrasting conditions 1 and 2 could be >>>>>>>>>>>>>> specified >>>>>>>>>>>>>> as -a >>>>>>>>>>>>>> 1 -a 2 -a 3 -c 4 -c 5 -c 6). >>>>>>>>>>>>>> >>>>>>>>>>>>>> 2) the latency and dispersion regressors are being ignored (a >>>>>>>>>>>>>> common >>>>>>>>>>>>>> practice). The contrast weights should therefore be >>>>>>>>>>>>>> specified as >>>>>>>>>>>>>> -a 1 >>>>>>>>>>>>>> -c 2. >>>>>>>>>>>>> This is what happens. If you want to use the derivatives, >>>>>>>>>>>>> then you >>>>>>>>>>>>> need >>>>>>>>>>>>> to spec -setwdelay. When you run the command, it will >>>>>>>>>>>>> prompt you >>>>>>>>>>>>> for 3 >>>>>>>>>>>>> values to use. If you spec 1 0 0, then it will be the same >>>>>>>>>>>>> as the >>>>>>>>>>>>> default. If you want to test only the first derivative, >>>>>>>>>>>>> then you >>>>>>>>>>>>> would >>>>>>>>>>>>> spec 0 1 0. Note that the 3rd regressor is the 2nd >>>>>>>>>>>>> derivative wrt >>>>>>>>>>>>> time, >>>>>>>>>>>>> not the first derivative wrt the dispersion parameter. You >>>>>>>>>>>>> cannot get >>>>>>>>>>>>> the Calhoun 2004 value using a contrast (it is non-linear). >>>>>>>>>>>>> doug >>>>>>>>>>>>>> >>>>>>>>>>>>>> 3) The Calhoun et al (2004) approach is being used to >>>>>>>>>>>>>> combine the >>>>>>>>>>>>>> three regressors into a "derivative boost" amplitude >>>>>>>>>>>>>> measure. The contrast weights should therefore be specified >>>>>>>>>>>>>> as -a >>>>>>>>>>>>>> 1 -c 2. >>>>>>>>>>>>>> >>>>>>>>>>>>>> Thanks for any help you can give me! >>>>>>>>>>>>>> >>>>>>>>>>>>>> Joe >>>>>>>>>>>>>> >>>>>>>>>>>>>> -------------------------------------------------------------------------------- >>>>>>>>>>>>>> >>>>>>>>>>>>>> Joseph Dien, >>>>>>>>>>>>>> Senior Research Scientist >>>>>>>>>>>>>> University of Maryland >>>>>>>>>>>>>> >>>>>>>>>>>>>> E-mail:jdie...@mac.com <mailto:jdie...@mac.com> >>>>>>>>>>>>>> <mailto:jdie...@mac.com >>>>>>>>>>>>>> <mailto:jdie...@mac.com>><mailto:jdie...@mac.com >>>>>>>>>>>>>> <mailto:jdie...@mac.com>> >>>>>>>>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>>>>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>>>>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>>>>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>>>>>>>>>> Phone: 202-297-8117 >>>>>>>>>>>>>> http://joedien.com// <http://joedien.com//> >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> _______________________________________________ >>>>>>>>>>>>>> Freesurfer mailing list >>>>>>>>>>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>>>>>>>>>> <mailto:Freesurfer@nmr.mgh.harvard.edu> >>>>>>>>>>>>>> <mailto:Freesurfer@nmr.mgh.harvard.edu >>>>>>>>>>>>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>> >>>>>>>>>>>>>> <mailto:Freesurfer@nmr.mgh.harvard.edu >>>>>>>>>>>>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>> >>>>>>>>>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>>>>>>>>>>> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >>>>>>>>>>>>> >>>>>>>>>>>>> -- >>>>>>>>>>>>> Douglas N. Greve, Ph.D. >>>>>>>>>>>>> MGH-NMR Center >>>>>>>>>>>>> gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> >>>>>>>>>>>>> <mailto:gr...@nmr.mgh.harvard.edu >>>>>>>>>>>>> <mailto:gr...@nmr.mgh.harvard.edu>><mailto:gr...@nmr.mgh.harvard.edu >>>>>>>>>>>>> <mailto:gr...@nmr.mgh.harvard.edu>> >>>>>>>>>>>>> <mailto:gr...@nmr.mgh.harvard.edu >>>>>>>>>>>>> <mailto:gr...@nmr.mgh.harvard.edu>> >>>>>>>>>>>>> <mailto:gr...@nmr.mgh.harvard.edu >>>>>>>>>>>>> <mailto:gr...@nmr.mgh.harvard.edu>> >>>>>>>>>>>>> <mailto:gr...@nmr.mgh.harvard.edu >>>>>>>>>>>>> <mailto:gr...@nmr.mgh.harvard.edu>> >>>>>>>>>>>>> Phone Number: 617-724-2358 >>>>>>>>>>>>> Fax: 617-726-7422 >>>>>>>>>>>>> >>>>>>>>>>>>> Bugs:surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>>>>>>>>>>>> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>>>>>>>>>>>> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>> >>>>>>>>>>>>> FileDrop:https://gate.nmr.mgh.harvard.edu/filedrop2 >>>>>>>>>>>>> <http://gate.nmr.mgh.harvard.edu/filedrop2> >>>>>>>>>>>>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>>>>>>>>>>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> >>>>>>>>>>>>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>>>>>>>>>>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>> >>>>>>>>>>>>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>>>>>>>>>>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>> >>>>>>>>>>>>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>>>>>>>>>>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>> >>>>>>>>>>>>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>>>>>>>>>>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>> >>>>>>>>>>>>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>>>>>>>>>>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>> >>>>>>>>>>>>> Outgoing: >>>>>>>>>>>>> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >>>>>>>>>>>>> <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/> >>>>>>>>>>>>> >>>>>>>>>>>>> _______________________________________________ >>>>>>>>>>>>> Freesurfer mailing list >>>>>>>>>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>>>>>>>>> <mailto:Freesurfer@nmr.mgh.harvard.edu> >>>>>>>>>>>>> <mailto:Freesurfer@nmr.mgh.harvard.edu >>>>>>>>>>>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>> >>>>>>>>>>>>> <mailto:Freesurfer@nmr.mgh.harvard.edu >>>>>>>>>>>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>> >>>>>>>>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>>>>>>>>>> >>>>>>>>>>>>> >>>>>>>>>>>>> The information in this e-mail is intended only for the >>>>>>>>>>>>> person to >>>>>>>>>>>>> whom it is >>>>>>>>>>>>> addressed. If you believe this e-mail was sent to you in >>>>>>>>>>>>> error and >>>>>>>>>>>>> the e-mail >>>>>>>>>>>>> contains patient information, please contact the Partners >>>>>>>>>>>>> Compliance HelpLine at >>>>>>>>>>>>> http://www.partners.org/complianceline . If the e-mail was >>>>>>>>>>>>> sent to >>>>>>>>>>>>> you in error >>>>>>>>>>>>> but does not contain patient information, please contact the >>>>>>>>>>>>> sender >>>>>>>>>>>>> and properly >>>>>>>>>>>>> dispose of the e-mail. >>>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> -------------------------------------------------------------------------------- >>>>>>>>>>>> >>>>>>>>>>>> Joseph Dien, >>>>>>>>>>>> Senior Research Scientist >>>>>>>>>>>> University of Maryland >>>>>>>>>>>> >>>>>>>>>>>> E-mail:jdie...@mac.com <mailto:jdie...@mac.com> >>>>>>>>>>>> <mailto:jdie...@mac.com >>>>>>>>>>>> <mailto:jdie...@mac.com>><mailto:jdie...@mac.com >>>>>>>>>>>> <mailto:jdie...@mac.com>> >>>>>>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>>>>>>>> Phone: 202-297-8117 >>>>>>>>>>>> http://joedien.com// <http://joedien.com//> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> _______________________________________________ >>>>>>>>>>>> Freesurfer mailing list >>>>>>>>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>>>>>>>> <mailto:Freesurfer@nmr.mgh.harvard.edu> >>>>>>>>>>>> <mailto:Freesurfer@nmr.mgh.harvard.edu >>>>>>>>>>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>> >>>>>>>>>>>> <mailto:Freesurfer@nmr.mgh.harvard.edu >>>>>>>>>>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>> >>>>>>>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>>>>>>>>> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> The information in this e-mail is intended only for the >>>>>>>>>>>> person to >>>>>>>>>>>> whom it is >>>>>>>>>>>> addressed. If you believe this e-mail was sent to you in >>>>>>>>>>>> error and >>>>>>>>>>>> the e-mail >>>>>>>>>>>> contains patient information, please contact the Partners >>>>>>>>>>>> Compliance >>>>>>>>>>>> HelpLine at >>>>>>>>>>>> http://www.partners.org/complianceline >>>>>>>>>>>> <http://www.partners.org/complianceline>. If the e-mail was >>>>>>>>>>>> sent to >>>>>>>>>>>> you in error >>>>>>>>>>>> but does not contain patient information, please contact the >>>>>>>>>>>> sender >>>>>>>>>>>> and properly >>>>>>>>>>>> dispose of the e-mail. >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> -------------------------------------------------------------------------------- >>>>>>>>>>> >>>>>>>>>>> Joseph Dien, >>>>>>>>>>> Senior Research Scientist >>>>>>>>>>> University of Maryland >>>>>>>>>>> >>>>>>>>>>> E-mail:jdie...@mac.com <mailto:jdie...@mac.com> >>>>>>>>>>> <mailto:jdie...@mac.com >>>>>>>>>>> <mailto:jdie...@mac.com>><mailto:jdie...@mac.com >>>>>>>>>>> <mailto:jdie...@mac.com>> >>>>>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>>>>>>> Phone: 202-297-8117 >>>>>>>>>>> http://joedien.com// <http://joedien.com//> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> _______________________________________________ >>>>>>>>>>> Freesurfer mailing list >>>>>>>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>>>>>>> <mailto:Freesurfer@nmr.mgh.harvard.edu> >>>>>>>>>>> <mailto:Freesurfer@nmr.mgh.harvard.edu >>>>>>>>>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>> >>>>>>>>>>> <mailto:Freesurfer@nmr.mgh.harvard.edu >>>>>>>>>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>> >>>>>>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>>>>>>>> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> The information in this e-mail is intended only for the person to >>>>>>>>>>> whom it is >>>>>>>>>>> addressed. If you believe this e-mail was sent to you in >>>>>>>>>>> error and >>>>>>>>>>> the e-mail >>>>>>>>>>> contains patient information, please contact the Partners >>>>>>>>>>> Compliance >>>>>>>>>>> HelpLine at >>>>>>>>>>> http://www.partners.org/complianceline >>>>>>>>>>> <http://www.partners.org/complianceline>. If the e-mail was sent to >>>>>>>>>>> you in error >>>>>>>>>>> but does not contain patient information, please contact the >>>>>>>>>>> sender >>>>>>>>>>> and properly >>>>>>>>>>> dispose of the e-mail. >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> -------------------------------------------------------------------------------- >>>>>>>>>> >>>>>>>>>> Joseph Dien, >>>>>>>>>> Senior Research Scientist >>>>>>>>>> University of Maryland >>>>>>>>>> >>>>>>>>>> E-mail:jdie...@mac.com <mailto:jdie...@mac.com> >>>>>>>>>> <mailto:jdie...@mac.com >>>>>>>>>> <mailto:jdie...@mac.com>><mailto:jdie...@mac.com >>>>>>>>>> <mailto:jdie...@mac.com>> >>>>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>>>>>> Phone: 202-297-8117 >>>>>>>>>> http://joedien.com// <http://joedien.com//> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>> >>>>>>>>> -- >>>>>>>>> Douglas N. Greve, Ph.D. >>>>>>>>> MGH-NMR Center >>>>>>>>> gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> >>>>>>>>> <mailto:gr...@nmr.mgh.harvard.edu >>>>>>>>> <mailto:gr...@nmr.mgh.harvard.edu>><mailto:gr...@nmr.mgh.harvard.edu >>>>>>>>> <mailto:gr...@nmr.mgh.harvard.edu>> >>>>>>>>> <mailto:gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> >>>>>>>>> <mailto:gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> >>>>>>>>> Phone Number: 617-724-2358 >>>>>>>>> Fax: 617-726-7422 >>>>>>>>> >>>>>>>>> Bugs:surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>>>>>>>> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>>>>>>>> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>> >>>>>>>>> FileDrop:https://gate.nmr.mgh.harvard.edu/filedrop2 >>>>>>>>> <http://gate.nmr.mgh.harvard.edu/filedrop2> >>>>>>>>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>>>>>>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> >>>>>>>>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>>>>>>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>> >>>>>>>>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>>>>>>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>> >>>>>>>>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>>>>>>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>> >>>>>>>>> Outgoing: >>>>>>>>> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >>>>>>>>> <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/> >>>>>>>>> >>>>>>>>> _______________________________________________ >>>>>>>>> Freesurfer mailing list >>>>>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>>>>> <mailto:Freesurfer@nmr.mgh.harvard.edu> >>>>>>>>> <mailto:Freesurfer@nmr.mgh.harvard.edu >>>>>>>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>> >>>>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>>>>>> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >>>>>>>> >>>>>>>> >>>>>>>> -------------------------------------------------------------------------------- >>>>>>>> >>>>>>>> Joseph Dien, >>>>>>>> Senior Research Scientist >>>>>>>> University of Maryland >>>>>>>> >>>>>>>> E-mail:jdie...@mac.com <mailto:jdie...@mac.com> >>>>>>>> <mailto:jdie...@mac.com >>>>>>>> <mailto:jdie...@mac.com>><mailto:jdie...@mac.com >>>>>>>> <mailto:jdie...@mac.com>> >>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>>>> Phone: 202-297-8117 >>>>>>>> http://joedien.com// <http://joedien.com//> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>> >>>>>>> -- >>>>>>> Douglas N. Greve, Ph.D. >>>>>>> MGH-NMR Center >>>>>>> gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> >>>>>>> <mailto:gr...@nmr.mgh.harvard.edu >>>>>>> <mailto:gr...@nmr.mgh.harvard.edu>><mailto:gr...@nmr.mgh.harvard.edu >>>>>>> <mailto:gr...@nmr.mgh.harvard.edu>> >>>>>>> <mailto:gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> >>>>>>> Phone Number: 617-724-2358 >>>>>>> Fax: 617-726-7422 >>>>>>> >>>>>>> Bugs:surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>>>>>> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>>>>>> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>> >>>>>>> FileDrop:https://gate.nmr.mgh.harvard.edu/filedrop2 >>>>>>> <http://gate.nmr.mgh.harvard.edu/filedrop2> >>>>>>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>>>>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> >>>>>>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>>>>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>> >>>>>>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>>>>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>> >>>>>>> Outgoing: >>>>>>> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >>>>>>> <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/> >>>>>>> >>>>>>> _______________________________________________ >>>>>>> Freesurfer mailing list >>>>>>> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >>>>>>> <mailto:Freesurfer@nmr.mgh.harvard.edu >>>>>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>> >>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>>>> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >>>>>> >>>>>> >>>>>> -------------------------------------------------------------------------------- >>>>>> >>>>>> Joseph Dien, >>>>>> Senior Research Scientist >>>>>> University of Maryland >>>>>> >>>>>> E-mail:jdie...@mac.com <mailto:jdie...@mac.com> >>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>><mailto:jdie...@mac.com >>>>>> <mailto:jdie...@mac.com>> >>>>>> <mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>>>> Phone: 202-297-8117 >>>>>> http://joedien.com// <http://joedien.com//> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>> >>>>> -- >>>>> Douglas N. Greve, Ph.D. >>>>> MGH-NMR Center >>>>> gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> >>>>> <mailto:gr...@nmr.mgh.harvard.edu >>>>> <mailto:gr...@nmr.mgh.harvard.edu>><mailto:gr...@nmr.mgh.harvard.edu >>>>> <mailto:gr...@nmr.mgh.harvard.edu>> >>>>> Phone Number: 617-724-2358 >>>>> Fax: 617-726-7422 >>>>> >>>>> Bugs:surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>>>> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>>>> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>> >>>>> FileDrop:https://gate.nmr.mgh.harvard.edu/filedrop2 >>>>> <http://gate.nmr.mgh.harvard.edu/filedrop2> >>>>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> >>>>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>> >>>>> Outgoing:ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >>>>> <http://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/> >>>>> >>>>> _______________________________________________ >>>>> Freesurfer mailing list >>>>> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >>>>> <mailto:Freesurfer@nmr.mgh.harvard.edu >>>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>> >>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >>>> >>>> >>>> -------------------------------------------------------------------------------- >>>> >>>> Joseph Dien, >>>> Senior Research Scientist >>>> University of Maryland >>>> >>>> E-mail:jdie...@mac.com <mailto:jdie...@mac.com> <mailto:jdie...@mac.com >>>> <mailto:jdie...@mac.com>><mailto:jdie...@mac.com <mailto:jdie...@mac.com>> >>>> Phone: 202-297-8117 >>>> http://joedien.com// <http://joedien.com//> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>> >>> -- >>> Douglas N. Greve, Ph.D. >>> MGH-NMR Center >>> gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> >>> <mailto:gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> >>> Phone Number: 617-724-2358 >>> Fax: 617-726-7422 >>> >>> Bugs:surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>> >>> FileDrop:https://gate.nmr.mgh.harvard.edu/filedrop2 >>> <http://gate.nmr.mgh.harvard.edu/filedrop2> >>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> >>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>> >>> Outgoing:ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >>> <http://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >>> <mailto:Freesurfer@nmr.mgh.harvard.edu >>> <mailto:Freesurfer@nmr.mgh.harvard.edu>> >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >> >> -------------------------------------------------------------------------------- >> >> Joseph Dien, PhD >> Senior Research Scientist >> Maryland Neuroimaging Center >> University of Maryland, College Park >> E-mail: jdie...@mac.com <mailto:jdie...@mac.com> <mailto:jdie...@mac.com >> <mailto:jdie...@mac.com>> >> Cell Phone: 202-297-8117 >> http://joedien.com <http://joedien.com/> >> > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > <https://gate.nmr.mgh.harvard.edu/filedrop2> > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/> > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> -------------------------------------------------------------------------------- Joseph Dien, PhD Senior Research Scientist Maryland Neuroimaging Center University of Maryland, College Park E-mail: jdie...@mac.com Cell Phone: 202-297-8117 http://joedien.com
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
