Can you give us more info about the design and the contrast you are testing? What does the uncorrected map look like?
On 03/24/2016 09:56 AM, Miracle Ozzoude wrote: > I used 3 pos --cwpvalthresh 0.05 for correction. This displayed the precuneus > area in yellow for one of my results however, for the other it displayed the > entire hemisphere in yellow. Do I need to use the configure-- overlay? ‎Also, > when I tried to view the cluster summary for the entire hemisphere results, I > did not see a single cluster unlike, the cluster summary for the precuneus > results > > Sent from my BlackBerry 10 smartphone. > Original Message > From: Bruce Fischl > Sent: Thursday, March 24, 2016 9:48 AM > To: Freesurfer support list > Reply To: Freesurfer support list > Subject: Re: [Freesurfer] whole hemisphere is yellow > > > if it's all yellow it means everything is significant. What threshold are > you using? > On Thu, 24 Mar 2016, Miracle Ozzoude wrote: > >> Hello Bruce, >> No. This was after I ran the correction for multiple comparisons. Do I need >> to change the threshold too? My other results were fine. Thanks >> Best, >> Miracle >> >> Sent from my BlackBerry 10 smartphone. >> Original Message >> From: Bruce Fischl >> Sent: Thursday, March 24, 2016 8:45 AM >> To: Freesurfer support list >> Reply To: Freesurfer support list >> Subject: Re: [Freesurfer] whole hemisphere is yellow >> >> >> Hi Miracle >> >> have you tried changing the thresholds? What kinds of values are you >> seeing? >> >> Bruce >> On Wed, 23 Mar 2016, Miracle Ozzoude wrote: >> >>> hello doug, >>> i performed a group analysis and after correction for multiple comparisons >>> when i tried to load the corrected clusters the whole hemisphere was >>> completely yellow. what should i do? >>> Best, >>> Miracle >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it is >> addressed. If you believe this e-mail was sent to you in error and the e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
