Hi Emad - I believe that it's not finding your freesurfer recons. They
should be under the $SUBJECTS_DIR and have the same names for time points
and longitudinal template as what is under your tracula output directory
(if the latter is different from SUBJECTS_DIR).
Best,
a.y
On Fri, 1 Apr 2016, Emad Ahmadi wrote:
Hi Anastasia,
I’ve attached the log files. The cases are:
1. Case #2; time points: 2a, 2b; base template: 2tem
2. Case #3; time points: 3a, 3b; base template: 3tem
Thank you again for your help,
Emad
Emad Ahmadi, MD
-----------------------------------------------
Research Fellow in Radiology
Massachusetts General Hospital
Harvard Medical School
25 New Chardon Street, Suite 400
Boston, MA 02114
Tel: 617 726 5237
Email: e...@nmr.mgh.harvard.edu
On Apr 1, 2016, at 10:49 AM, Anastasia Yendiki <ayend...@nmr.mgh.harvard.edu>
wrote:
Hi Emad - The error happens at the very beginning, so I'm wondering if
something went wrong in the previous steps, before -path. Can you please send
me the entire trac-all.log of one of your subjects? Thank you!
a.y
On Wed, 30 Mar 2016, Emad Ahmadi wrote:
Hi Anastasia,
I hope you’re enjoying your evening!
I’m doing longitudinal TRACULA analysis on two subjects, each having two time
points. I have already taken the steps of longitudinal recon-all and trac-all -prep
& -bedp.
Now I’m trying to do trac-all -path, but it gives me an error that I cannot
recognize. I would greatly appreciate your help. I’ve attached the log files
and the config file.
Thank you so much,
Emad
Emad Ahmadi, MD
-----------------------------------------------
Research Fellow in Radiology
Massachusetts General Hospital
Harvard Medical School
25 New Chardon Street, Suite 400
Boston, MA 02114
Tel: 617 726 5237
Email: e...@nmr.mgh.harvard.edu
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