Hi Gaurang
it depends on what you are trying to fix. Is it cortical gray matter? If
so, it is usually either the case that the underlying white matter is
incorrect, in which case you fix it and the gray will be accurate, or the
auto-detected class intensities are inaccurate. Can you send us an image or
two?
cheers
Bruce
On Fri, 6 May 2016, Shyam Limachia wrote:
To whom it may concern:
I had question about Freesurfer, I am trying to correct the gray matter
volume. So I made changes by adding pixels to the contour, and ran
recon-all. Subsequently, when I opened up the file after performing
recon-all I saw were the pixels (which are white) that I added when I was
making the changes. How do you make changes to the gray matter, and what
type of recon command should I run after making the changes.
I searched through the various tutorials, but that further confused me.
Thank you for your time.
Best Regards,
Gaurang Shyam Limachia
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