Hi Eugenio, I think he is just after cortical surfaces.
Matt. From: <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of "Iglesias, Eugenio" <e.igles...@ucl.ac.uk> Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> Date: Friday, June 10, 2016 at 12:30 PM To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] using both T1/T2 and resolutions Hi! I actually sent out an email yesterday regarding this. The way that the subfield module is set up, you cannot take advantage of your full res T1 and your T1. We are working on a solution. Cheers, Eugenio Juan Eugenio Iglesias Translational Imaging Group University College London http://www.jeiglesias.com http://cmictig.cs.ucl.ac.uk/ > On 10 Jun 2016, at 17:04, Matt Glasser <m...@ma-tea.com> wrote: > > Hi Jim, > > I would just use the HCP Pipelines for that: > https://github.com/Washington-University/Pipelines, as they take care of all > of those things re FreeSurfer. I would set to using the 0.8mm templates so > that nothing is down sampled. > > Peace, > > Matt. > > From: <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of "Alexopoulos, > Dimitrios" <alexopoulo...@kids.wustl.edu> > Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> > Date: Friday, June 10, 2016 at 10:56 AM > To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu> > Subject: [Freesurfer] using both T1/T2 and resolutions > > Hi, > > We¹d like to process pediatric data through the complete FS 5.3 pipeline. The > T1/T2 data are acquired with a 3T Siemens as follows: > T1 mpr sag - 0.82x0.82x0.85 > T2 Space - 1x1x1 > > We¹d like to process using both the T1 and T2 (for better dura removal and > possible myelin analysis). > Is it possible to use the hires T1 and have data not downsampled to 1x1x1? > Ifpossible, can this be done in tandem with the lower resolution T2-space? > > What recon-all command would be best for this process? > > Jim > > > The materials in this email are private and may contain Protected Health > Information. If you are not the intended recipient, be advised that any > unauthorized use, disclosure, copying, distribution or the taking of any > action in reliance on the contents of this information is strictly prohibited. > If you have received this email in error, please immediately notify the sender > via telephone or return email. > _______________________________________________ Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information > in this e-mail is intended only for the person to whom it is addressed. If you > believe this e-mail was sent to you in error and the e-mail contains patient > information, please contact the Partners Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error but does not contain patient information, please contact the sender and > properly dispose of the e-mail._______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
