The problem appears to be cat: /imagelist.dat: No such file or directory
Not sure what is going on there. Make sure you're not in / when running it or that the output points to /. Try running it with -debug as the first argument and sending the output. On 06/15/2016 04:36 PM, Raney, Talia L. wrote: > My command line is dcmunpack -src $dcmdir -targ $homedir/$subj -fsfast -run > $run_num restingstate nii.gz f.nii.gz and the output is > --------------------------------------- > 1 24 restingstate f 0 0 > --------------------------------------- > Searching for matching files > Wed Jun 15 16:34:27 EDT 2016 > Wed Jun 15 16:34:27 EDT 2016 > Found 65 total files. > cat: /imagelist.dat: No such file or directory > Found 0 unique series: > Patient: Undefined variable. > > ________________________________________ > From: freesurfer-boun...@nmr.mgh.harvard.edu > [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve > [gr...@nmr.mgh.harvard.edu] > Sent: Wednesday, June 15, 2016 4:08 PM > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] Found 0 unique series > > what is your command line and what is the full terminal output > > On 06/15/2016 04:06 PM, Raney, Talia L. wrote: >> Hi FreeSurfer users, >> I've been running dcmunpack and I get an error that said Found 0 unique >> series, even though it has dicom files. What does this mean and what could I >> do to fix the problem? >> Best, >> Talia >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
