*Hello,*
*I’m trying to run recon-all -lgi - s Subjectname on my data but i am
getting this error!*
*******************************************************
Error in dsearchn (line 79)
[d(i),t(i)] = min(sum((x-yi).^2,2));
Error in mesh_vertex_nearest (line 29)
nearestIndex = dsearchn(vertices,points);
Error in reorganize_verticeslist (line 28)
[nextindex,nextvalue]=mesh_vertex_nearest(mesh_total.vertices(remaininglist,:),mesh_total.vertices(verticeslist(start_vertex),:));
Error in make_roi_paths (line 93)
reorglist = reorganize_verticeslist (mesh_total, A, mesh_outer, perim,
verticeslist, step);
>>
ERROR: make_roi_paths did not complete successfully!
*******************************************************
*I checked the archives and saw a reply by Marie to someone who had the
same problem.*
*She recommended changing the info inside “SearchProjectionByPial.m" in the
~/Application/freesurfer/matlab directory to:*
*******************************************************
function [verticeslist]=SearchProjectionOnPial(mesh_total,mesh_outer,perim,
step)
% step is typically set between 5 and 10. Default is 7, increasing it will
% limit redundancies in the resulting path file.
verticeslist=[];
si=max(size(perim));
for t=1:step:si
[nearestIndexMT,nearestValuesMT]=mesh_vertex_nearest(mesh_total.vertices,mesh_outer.vertices(perim(t),:));
verticeslist= [verticeslist nearestIndexMT];
end
verticeslist=unique(vertices list);
*******************************************************
*Which i did, but i am still getting this error!*
*Any recommendations on what to do next? I am running MATLAB_R2016.*
*Thank you in advance,*
*WY*
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