Essentially, once segmentation is achieved, how do you mesh the scans? On Mon, Jun 27, 2016 at 3:41 PM, Abbie McNulty <amcnu...@stanford.edu> wrote:
> Hi Bruce, > > I am trying to create a mesh of the MRI scans, eventually with imported > scans, but for now just using the information available through the > software. How do you work these voxel segmentations? I'm just very new with > the software. > > Say I import an MRI scan, and I want to cortically segment it in order to > create a mesh of the volume. What are the steps to do this and how do I > follow through with each step? I tried to watch the youtube tutorials on > the Freesurfer youtube, but since they are slides informing of what > Freesurfer can do and not quite a play-by-play interaction of Freeview, I > am stuck. > > Thanks > > Abbie > > On Mon, Jun 27, 2016 at 3:30 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> > wrote: > >> Hi Abbie >> >> what are you trying to create a mesh of? We supply meshes for the >> gray/white interface and for the pial surface. We supply voxel >> segmentations of lots of other things that you could mesh, but we don't >> by default. >> >> cheers >> Bruce >> On Mon, 27 Jun 2016, Abbie McNulty wrote: >> >> > Hello, >> > I am trying to segment a MRI brain in order to create a mesh of the >> image >> > into finite elements, but I am very new with Freesurfer/Freeview and am >> not >> > familiar with the tools. So far, I have only uploaded brain.mgt from the >> > bert file that comes with the program. If I wanted to mesh this brain, >> how >> > should I proceed? The online tutorials have confused me especially >> since I >> > am not sure if I am supposed to be using the terminal or the command >> window >> > for a lot of the code commands. >> > >> > Any help would be appreciated. >> > >> > Thanks! >> > >> > Abbie McNulty >> > >> > -- >> > Abigail C. McNulty >> > Stanford University Class of 2018 >> > B.A. Candidate in Bioengineering >> > Stanford Women's XC/ Track and Field >> > >> > >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> > > > -- > Abigail C. McNulty > Stanford University Class of 2018 > B.A. Candidate in Bioengineering > Stanford Women's XC/ Track and Field > -- Abigail C. McNulty Stanford University Class of 2018 B.A. Candidate in Bioengineering Stanford Women's XC/ Track and Field
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
