Hi Hsiang-Yuan, I do not know how color file works for MRIcron, so I am unable to help.
Regards, Thomas On Tue, Jul 5, 2016 at 2:41 AM, Hsiang-Yuan Lin <[email protected]> wrote: > Hi Thomas, > > Thanks for swift instruction. It works well. However, I have further > question: could I write the color lut into header? Because I used your > suggested Colorlut information to create a new .lut file and put them into > MRIcron templates folder with the correctely oriented Yeo2011_7network > template. But it failed to present the designated color in MRIcron. > > Thank you! > > Best, > Hsiang-Yuan > > On Mon, Jul 4, 2016 at 4:37 PM, Thomas Yeo <[email protected]> wrote: >> >> Hi Hsiang-Yuan, >> >> That's because the header information is different. You can do the >> following: >> >> >> mri_vol2vol --mov Yeo2011Parcellation.nii.gz --targ >> >> FSL_MNI2mm_template.nii.gz --regheader --nearest --o Yeo2011_FSL2mm.nii.gz >> >> The output file "Yeo2011_FSL2mm.nii.gz" should have an orientation >> compatible with mricron. Can you let me know if this works. >> >> Thanks, >> Thomas >> >> On Mon, Jul 4, 2016 at 12:58 AM, Hsiang-Yuan Lin <[email protected]> >> wrote: >> > Hi Prof. Yeo, >> > >> > I have problems utilizing yeo 7/17 cortical network parcellation maps as >> > templates in MRIcron (I aim to use your cortical parcellation maps to >> > underlay my findings in order to derive the implications based on iFC >> > networks). To be specific, there is an orientation problem in the >> > current >> > version of parcellation maps in MNI space. >> > >> > Thank you for your help in advance. >> > >> > Best, >> > Hsiang-Yuan >> > >> > -- >> > Hsiang-Yuan Lin, M.D. >> > Attending Psychiatrist & Adjunct Lecturer >> > Department of Psychiatry & Child Mental Health Center >> > National Taiwan University Hospital and College of Medicine >> > email: [email protected] >> > CV: >> > >> > https://drive.google.com/file/d/0B3jQGSXih2aeY2o1QnJwUVJjU1U/view?usp=sharing >> > https://www.researchgate.net/profile/Hsiang_Yuan_Lin2 >> > >> > >> > >> > -- >> > Hsiang-Yuan Lin, M.D. >> > Attending Psychiatrist & Adjunct Lecturer >> > Department of Psychiatry & Child Mental Health Center >> > National Taiwan University Hospital and College of Medicine >> > email: [email protected] >> > CV: >> > >> > https://drive.google.com/file/d/0B3jQGSXih2aeY2o1QnJwUVJjU1U/view?usp=sharing >> > https://www.researchgate.net/profile/Hsiang_Yuan_Lin2 > > > > > -- > Hsiang-Yuan Lin, M.D. > Attending Psychiatrist & Adjunct Lecturer > Department of Psychiatry & Child Mental Health Center > National Taiwan University Hospital and College of Medicine > email: [email protected] > CV: > https://drive.google.com/file/d/0B3jQGSXih2aeY2o1QnJwUVJjU1U/view?usp=sharing > https://www.researchgate.net/profile/Hsiang_Yuan_Lin2 _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
