nope, I would start with the aseg and only check other things if the
ventricles aren't accurate
On Mon, 18 Jul 2016, Tamara Tavares wrote:
Thank you again Bruce.
Since I am primarily interested in ventricular volume, do you think it is
necessary to check the the brainmask.mgz for bright or dark spots indicating
an intensity normalization error? As well, what about a skull strip error
such as removal of brain tissue? I have noticed that sometimes skull strip
removes parts of the occipital lobe and I was going to adjust the watershed
parameters and re-run recon-all. Do you think this is necessary or would
affect the ventricular volume results?
Thank you in advance for your help,
Tamara
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