And I would say if you want to do T1w/T2w myelin mapping the T2w scan will give you more contrast for that, as the fluid inversion does seem to reduce your contrast for myelin some (though it may increase your contrast for CSF). FLAIR can be useful for other things (like seeing some kinds of brain lesions more easily) so your choice might depend on what else you want to do with the images.
Peace, Matt. On 7/18/16, 6:59 PM, "Bruce Fischl" <freesurfer-boun...@nmr.mgh.harvard.edu on behalf of fis...@nmr.mgh.harvard.edu> wrote: >Hi Michelle > >that's a tough question. We don't have a ton of experience with it one >way or the other, but if I had to pick one I would pick FLAIR as long as >you are getting a 3D FLAIR with around 1mm voxels > >cheers >Bruce >On Mon, 18 Jul 2016, >Michelle T Kassel wrote: > >> >> Hello, >> >> >> I am beginning a new study and would like to determine the >> optimal T2 acquisition parameters for improved pial surface >> results from FreeSurfer. I am wondering if there is a difference in >>using a >> T2 or T2-FLAIR. I have found a discussion post from 2014 which provided >> useful >>information(https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2014-J >>uly/039580.ht >> ml), however, it seems from reading the post that newer developments >>were >> underway, and I was wondering if I could get an updated answer to the >> question: >> >> >> is there any difference from freesurfer's perspective of using T2-space >>or >> T2-space-flair? >> >> >> Thank you for your help! >> >> >> Michelle >> >> >>_______________________________________________ >Freesurfer mailing list >Freesurfer@nmr.mgh.harvard.edu >https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > >The information in this e-mail is intended only for the person to whom it >is >addressed. If you believe this e-mail was sent to you in error and the >e-mail >contains patient information, please contact the Partners Compliance >HelpLine at >http://www.partners.org/complianceline . If the e-mail was sent to you in >error >but does not contain patient information, please contact the sender and >properly >dispose of the e-mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
