Hi Dr. Fischl, Thank you for clarifying that about norm.mgz for checking segmentations. Good to know that brain and brainmask wash out low contrast borders.
Cheers, Reema -- *Reema Jayakar, M.A.* Doctoral Candidate - Clinical Neuropsychology Health Resources and Services Administration (HRSA) Fellow Department of Psychology Georgia State University Email: rjayak...@student.gsu.edu On Mon, Jul 18, 2016 at 4:42 PM, Reema Jayakar <reemajaya...@gmail.com> wrote: > Hello FS Listserv members, > > With regard to checking amygdala segmentation, is it appropriate to > overlay the aseg.mgz file on the brainmask.mgz? Or should I be overlaying > aseg.mgz on norm.mgz? I am aware of the general rule of thumb that > editing the subcortical segmentations generally is not recommended. > > Also, where can I find documentation on the Freeview options "Resample to > standard RAS space" and > > "Apply registration file". I am trying to understand whether or not it is > necessary for me to use any of these options for what I am doing with the > subcortical segmentations. > > > Thanks in advance for your help! > > Reema > > > > -- > *Reema Jayakar, M.A.* > Doctoral Candidate - Clinical Neuropsychology > Health Resources and Services Administration (HRSA) Fellow > Department of Psychology > Georgia State University > Email: rjayak...@student.gsu.edu > >
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