Hi Knut Jørgen - Do you get this error only with the dev version of
freesurfer? The command line causing the error is:
bbregister --s 4_test --init-fsl --dti --mov
/home/knutjbj/subjects/4_test/dmri/dwi.nii.gz --reg
/home/knutjbj/subjects/4_test/dmri/xfms/anatorig2diff.bbr.dat --fslmat
/home/knutjbj/subjects/4_test/dmri/xfms/diff2anatorig.bbr.mat
Can you please try running this with the 5.3 version?
Thanks!
a.y
On Wed, 13 Jul 2016, Knut J Bjuland wrote:
Hi Anastasia
Thanks. I am sending my entire trac-all.log
Knut Jøgen
On 07/12/2016 11:19 PM, Anastasia Yendiki wrote:
Hi Knut Jørgen - Can you please send your entire trac-all.log?
Thanks!
a.y
On Mon, 11 Jul 2016, Knut J Bjuland wrote:
flirt.fsl -ref
/home/knutjbj/subjects/023v4/dmri/xfms/tmp.bbregister.35024/fslregister/ref
vol.fslregister.nii
-in
/home/knutjbj/subjects/023v4/dmri/xfms/tmp.bbregister.35024/fslregister/mov
vol.fslregister.nii
-bins 256 -cost corratio -dof 6 -searchrx -90 90
-searchry -90 90
-searchrz -90 90 -verbose 0 -omat
/home/knutjbj/subjects/023v4/dmri/xfms/tmp.bbregister.35024/reg.init.dat.fs
l.mat
-init
/home/knutjbj/subjects/023v4/dmri/xfms/tmp.bbregister.35024/fslregister/fsl
mat0.trans.mat
-schedule
/usr/local/freesurfer/bin/flirt.newdefault.20080811.sch
terminate called after throwing an instance of
'NEWMAT::SingularException'
Abort (core dumped)
ERROR: flirt
Fedora 24
glibc-2.23.1-8.fc24.x86_64
gcc-6.1.1-3.fc24.x86_64
libstdc++-6.1.1-3.fc24.x86_64
ldd /usr/local/freesurfer/bin/flirt.fsl
linux-vdso.so.1 (0x00007ffe8b6c8000)
libz.so.1 => /lib64/libz.so.1
(0x00007feaeba06000)
libstdc++.so.6 => /lib64/libstdc++.so.6
(0x00007feaeb67e000)
libm.so.6 => /lib64/libm.so.6
(0x00007feaeb374000)
libgcc_s.so.1 => /lib64/libgcc_s.so.1
(0x00007feaeb15d000)
libc.so.6 => /lib64/libc.so.6
(0x00007feaead9a000)
/lib64/ld-linux-x86-64.so.2 (0x0000557ba6f46000)
Knut Jørgen Bjuland
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