actually I had forgotten that we described the basic surface deformation
to avoid dura in Andre's paper, which is what I first wrote it for:
2008 Brain morphometry with multiecho MPRAGE. van der
Kouwe, Andre J W; Benner, Thomas; Salat, David H and Fischl, Bruce
NeuroImage, 2008.
On Tue, 30 Aug 2016, Bruce Fischl wrote:
Hi Matt
I don't think that counts as a methods paper for the T2-based deformation.
There is no validation or comparison with other methods in it, and really not
enough detail to replicate what we did.
cheers
Bruce
On Tue, 30 Aug 2016, Matt Glasser wrote:
Sure there¹s a publication. See Figure 14:
http://www.sciencedirect.com/science/article/pii/S1053811913005053
Peace,
Matt.
On 8/30/16, 10:21 AM, "Bruce Fischl"
<freesurfer-boun...@nmr.mgh.harvard.edu on behalf of
fis...@nmr.mgh.harvard.edu> wrote:
Hi Don
the T2 or FLAIR helps us avoid dura. It is still a beta version though as
we don't have a ton of experience with it, and no, there is no reference
for it yet (or maybe ever) :)
Bruce
On Tue, 30 Aug 2016, Krieger, Donald N. wrote:
Dear list:
What are the advantages of including a T2 scan when running recon-all
all
?
Which results can it effect and to what extent?
And how sensitive is freesurfer to artifacts in the T2 scan?
Is there a good reference for this/
Thanks and best - Don
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