*Can you send the terminal output for recon-all -s subjid -qcache*
On 09/01/2016 02:53 PM, Jana Dinges wrote: > Dear freesurfer community, > we are conducting cortical-thickness analysis using freesurfer-5.3.0 and have > been experiencing some problems with the final analysis steps. > We are using the qdec. Uploading of the data table has been successful. When > we > try to use the “Analyze” command (design) in the qdec, we get the following > error message: > Error in Analyze: Couldn’t open file > /data/projects/oertelmatura/Neurodegeneration_MCI/AK38/surf/lh.thickness.fwhm10.fsaverage.mgz > or mgh > Obviously, the file was not created during preprocessing*although we ran > (recon-all -s subjid -qcache)* for every subject. > We wonder, how to create dir/lh.thickness.fwhm10.fsaverage.mgh and would be > very grateful for > your comments. > Yours sincerely, > JanaXXX > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
