Can you send me the label?
On 09/28/2016 05:54 PM, Crawford, Anna wrote:
> I get a different error when I use --regmethod surface (below). I double
> checked that I am in the correct hemishpere. I'm not sure if it has to do
> with teh volume I used to draw to ROI or something with how I drew it.
>
> Thanks,
>
> Anna
>
> mri_label2label --srcsubject segfs --srclabel
> /mnt/netScratch/crawforda/BrainStem/study11074/S2sdt/segfs/label/Testing1.label
> --trgsubject segfs --trglabel Testing1Ns.label --regmethod surface --hemi lh
>
> srclabel =
> /mnt/netScratch/crawforda/BrainStem/study11074/S2sdt/segfs/label/Testing1.label
> srcsubject = segfs
> trgsubject = segfs
> trglabel = Testing1Ns.label
> regmethod = surface
>
> srchemi = lh
> trghemi = lh
> trgsurface = white
> srcsurfreg = sphere.reg
> trgsurfreg = sphere.reg
> usehash = 1
> Use ProjAbs = 0, 0
> Use ProjFrac = 0, 0
> DoPaint 0
>
> SUBJECTS_DIR /mnt/netScratch/crawforda/BrainStem/study11074/S2sdt/
> FREESURFER_HOME /tools/freesurfer
> Loading source label.
> Found 216 points in source label.
> Starting surface-based mapping
> Reading source registration
>
> /mnt/netScratch/crawforda/BrainStem/study11074/S2sdt//segfs/surf/lh.sphere.reg
> Rescaling ... original radius = 100
> Reading target surface
> /mnt/netScratch/crawforda/BrainStem/study11074/S2sdt//segfs/surf/lh.white
> Reading target registration
>
> /mnt/netScratch/crawforda/BrainStem/study11074/S2sdt//segfs/surf/lh.sphere.reg
> Rescaling ... original radius = 100
> Building target registration hash (res=16).
> Building source registration hash (res=16).
> ERROR: there is a vertex in the label that cannot be
> matched to the surface. This usually occurs when
> the label and surface are from different subjects or
> hemispheres or the surface has been changed since
> the label was created.
> Label point 0: vno = -1, max = 115984
>
> ________________________________________
> From: freesurfer-boun...@nmr.mgh.harvard.edu
> [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve
> [gr...@nmr.mgh.harvard.edu]
> Sent: Wednesday, September 28, 2016 5:42 PM
> To: freesurfer@nmr.mgh.harvard.edu
> Subject: Re: [Freesurfer] Co-registering different source data
>
> Is Testing1.label a surface-based label? If so, use --regmethod surface
>
>
> On 09/28/2016 04:39 PM, Crawford, Anna wrote:
>> The subject path was
>> /mnt/netScratch/crawforda/Brainstem/study11074/S2sdt/segfs/surf
>> ________________________________________
>> From: freesurfer-boun...@nmr.mgh.harvard.edu
>> [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl
>> [fis...@nmr.mgh.harvard.edu]
>> Sent: Wednesday, September 28, 2016 4:35 PM
>> To: Freesurfer support list
>> Subject: Re: [Freesurfer] Co-registering different source data
>>
>> which lh.inflated and rh.inflated did you load? That is, for which
>> subject?
>> On Wed, 28 Sep 2016, Crawford, Anna wrote:
>>
>>> I just opened freeview (just typed freeview into the command line). Then
>>> from inside freeview, under the surfaces tab, I loaded the lh.inflated and
>>> rh.inflated. Also under the surfaces tab, under Label I chose the label
>>> file created (Testing1N.label). When I tried to open the label, is when
>>> Freeview crashed.
>>>
>>> Thanks,
>>>
>>> Anna
>>> ________________________________________
>>> From: freesurfer-boun...@nmr.mgh.harvard.edu
>>> [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl
>>> [fis...@nmr.mgh.harvard.edu]
>>> Sent: Wednesday, September 28, 2016 4:27 PM
>>> To: Freesurfer support list
>>> Subject: Re: [Freesurfer] Co-registering different source data
>>>
>>> what was your freeview command line, and what did you do to make it crash?
>>>
>>> On Wed, 28 Sep 2016, Crawford, Anna wrote:
>>>
>>>> Thank you! that seemed to have worked. I thought I had tried that before,
>>>> but must not that. The input/output is below. The new label was created.
>>>> When I tried to load the label onto the surface, FreeView crashed the same
>>>> as it did before though which brings me back to my original problem on
>>>> Freeview crashing when I try to put the label on the surface. Do I need to
>>>> change the label to a volume/surface to get this to work?
>>>>
>>>> Thanks,
>>>>
>>>> Anna
>>>>
>>>> mri_label2label --srcsubject segfs --srclabel Testing1.label --trgsubject
>>>> segfs --trglabel Testing1N.label --regmethod volume
>>>>
>>>> srclabel = Testing1.label
>>>> srcsubject = segfs
>>>> trgsubject = segfs
>>>> trglabel = Testing1N.label
>>>> regmethod = volume
>>>>
>>>> usehash = 1
>>>> Use ProjAbs = 0, 0
>>>> Use ProjFrac = 0, 0
>>>> DoPaint 0
>>>>
>>>> SUBJECTS_DIR /mnt/netScratch/crawforda/BrainStem/study11074/S2sdt/
>>>> FREESURFER_HOME /tools/freesurfer
>>>> Loading source label.
>>>> No such file or directory
>>>> mri_label2label: could not open label file Testing1.label
>>>> No such file or directory
>>>> ERROR reading Testing1.label
>>>> [crawforda@fmri2 ~]$ mri_label2label --srcsubject segfs --srclabel
>>>> /mnt/netScratch/crawforda/BrainStem/study11074/S2sdt/segfs/label/Testing1.label
>>>> --trgsubject segfs --trglabel Testing1N.label --regmethod volume
>>>>
>>>> srclabel =
>>>> /mnt/netScratch/crawforda/BrainStem/study11074/S2sdt/segfs/label/Testing1.label
>>>> srcsubject = segfs
>>>> trgsubject = segfs
>>>> trglabel = Testing1N.label
>>>> regmethod = volume
>>>>
>>>> usehash = 1
>>>> Use ProjAbs = 0, 0
>>>> Use ProjFrac = 0, 0
>>>> DoPaint 0
>>>>
>>>> SUBJECTS_DIR /mnt/netScratch/crawforda/BrainStem/study11074/S2sdt/
>>>> FREESURFER_HOME /tools/freesurfer
>>>> Loading source label.
>>>> Found 216 points in source label.
>>>> Starting volumetric mapping 216 points
>>>> Src2TrgVolReg: -----------------
>>>> 1.000 0.000 0.000 0.000;
>>>> 0.000 1.000 0.000 -0.000;
>>>> 0.000 -0.000 1.000 -0.000;
>>>> 0.000 0.000 0.000 1.000;
>>>> 0 -39.0000 17.0000 55.0000 -39.0000 17.0000 55.0000
>>>> 1 -38.0000 17.0000 55.0000 -38.0000 17.0000 55.0000
>>>> 2 -40.0000 18.0000 55.0000 -40.0000 18.0000 55.0000
>>>> 3 -39.0000 18.0000 55.0000 -39.0000 18.0000 55.0000
>>>> 4 -38.0000 18.0000 55.0000 -38.0000 18.0000 55.0000
>>>> Writing label file Testing1N.label 216
>>>> mri_label2label: Done
>>>>
>>>> ________________________________________
>>>> From: freesurfer-boun...@nmr.mgh.harvard.edu
>>>> [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas Greve
>>>> [gr...@nmr.mgh.harvard.edu]
>>>> Sent: Wednesday, September 28, 2016 4:08 PM
>>>> To: freesurfer@nmr.mgh.harvard.edu
>>>> Subject: Re: [Freesurfer] Co-registering different source data
>>>>
>>>> Try giving it the full path to the label, ie,
>>>>
>>>> --srclabel
>>>> /mnt/netScratch/crawforda/BrainStem/study11074/S2sdt/segfs/label/Testing1.label
>>>>
>>>> On 9/28/16 3:47 PM, Crawford, Anna wrote:
>>>>> Hi,
>>>>>
>>>>> Below is the command I entered with the output containing the error. I
>>>>> also tried different variations on the path for the directory, but this
>>>>> is the one I thought it should be.
>>>>>
>>>>> Thanks,
>>>>> Anna
>>>>>
>>>>> mri_label2label --srcsubject segfs --srclabel Testing1.label --trgsubject
>>>>> segfs --trglabel Testing1N.label --regmethod volume
>>>>>
>>>>> srclabel = Testing1.label
>>>>> srcsubject = segfs
>>>>> trgsubject = segfs
>>>>> trglabel = Testing1N.label
>>>>> regmethod = volume
>>>>>
>>>>> usehash = 1
>>>>> Use ProjAbs = 0, 0
>>>>> Use ProjFrac = 0, 0
>>>>> DoPaint 0
>>>>>
>>>>> SUBJECTS_DIR /mnt/netScratch/crawforda/BrainStem/study11074/S2sdt/
>>>>> FREESURFER_HOME /tools/freesurfer
>>>>> Loading source label.
>>>>> No such file or directory
>>>>> mri_label2label: could not open label file Testing1.label
>>>>> No such file or directory
>>>>> ERROR reading Testing1.label
>>>>> ______________________________________
>>>>> From: freesurfer-boun...@nmr.mgh.harvard.edu
>>>>> [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl
>>>>> [fis...@nmr.mgh.harvard.edu]
>>>>> Sent: Wednesday, September 28, 2016 3:11 PM
>>>>> To: Freesurfer support list
>>>>> Subject: Re: [Freesurfer] Co-registering different source data
>>>>>
>>>>> Hi Anna
>>>>>
>>>>> sorry, I've lost track of where this is at. Can you send us the full
>>>>> screen output of the command you tried to run and the error it gives?
>>>>>
>>>>> thanks
>>>>> Bruce
>>>>> On
>>>>> Tue, 27 Sep 2016, Crawford, Anna wrote:
>>>>>
>>>>>> I have tried multiple variations for my subject directory. I have had it
>>>>>> end at study11074, S2sdt, segfs, and label. I suspected it should either
>>>>>> be S2sdt or segfs. I get the same error in all cases still. When using a
>>>>>> differnt function with the subject directory path, I had ended at S2sdt,
>>>>>> the subject was segfs, and then the file I wanted to use. I thought it
>>>>>> would be the same in the case in that regard, but it doesn't seem to be
>>>>>> working that way.
>>>>>>
>>>>>> Thank you,
>>>>>> Anna
>>>>>> ________________________________________
>>>>>> From: freesurfer-boun...@nmr.mgh.harvard.edu
>>>>>> [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of dgw
>>>>>> [dgwake...@gmail.com]
>>>>>> Sent: Tuesday, September 27, 2016 12:04 PM
>>>>>> To: Freesurfer support list
>>>>>> Subject: Re: [Freesurfer] Co-registering different source data
>>>>>>
>>>>>> I think you SUBJECTS_DIR might be set incorrectly,
>>>>>>
>>>>>> /mnt/netScratch/crawforda/BrainStem/study11074/S2sdt/segfs/label
>>>>>>
>>>>>> I suspect the value should be:
>>>>>>
>>>>>> /mnt/netScratch/crawforda/BrainStem/study11074/S2sdt/
>>>>>>
>>>>>> or possibly something else:
>>>>>>
>>>>>> ${SUBJECTS_DIR}/$SUBJECT/label/
>>>>>> should be the directory with Testing.label
>>>>>>
>>>>>> hth
>>>>>> d
>>>>>>
>>>>>> On 9/27/16 11:58 AM, Crawford, Anna wrote:
>>>>>>> Th output is below:
>>>>>>>
>>>>>>> aparc.annot.a2009s.ctab lh.BA45.label
>>>>>>> lh.V2.thresh.label rh.BA4p.label
>>>>>>> aparc.annot.ctab lh.BA45.thresh.label
>>>>>>> rh.aparc.a2009s.annot rh.BA4p.thresh.label
>>>>>>> aparc.annot.DKTatlas40.ctab lh.BA4a.label rh.aparc.annot
>>>>>>> rh.BA6.label
>>>>>>> BA.ctab lh.BA4a.thresh.label
>>>>>>> rh.aparc.DKTatlas40.annot rh.BA6.thresh.label
>>>>>>> BA.thresh.ctab lh.BA4p.label rh.BA1.label
>>>>>>> rh.BA.annot
>>>>>>> lh.aparc.a2009s.annot lh.BA4p.thresh.label
>>>>>>> rh.BA1.thresh.label rh.BA.thresh.annot
>>>>>>> lh.aparc.annot lh.BA6.label rh.BA2.label
>>>>>>> rh.cortex.label
>>>>>>> lh.aparc.DKTatlas40.annot lh.BA6.thresh.label
>>>>>>> rh.BA2.thresh.label rh.entorhinal_exvivo.label
>>>>>>> lh.BA1.label lh.BA.annot rh.BA3a.label
>>>>>>> rh.MT.label
>>>>>>> lh.BA1.thresh.label lh.BA.thresh.annot
>>>>>>> rh.BA3a.thresh.label rh.MT.thresh.label
>>>>>>> lh.BA2.label lh.cortex.label rh.BA3b.label
>>>>>>> rh.perirhinal.label
>>>>>>> lh.BA2.thresh.label lh.entorhinal_exvivo.label
>>>>>>> rh.BA3b.thresh.label rh.V1.label
>>>>>>> lh.BA3a.label lh.MT.label rh.BA44.label
>>>>>>> rh.V1.thresh.label
>>>>>>> lh.BA3a.thresh.label lh.MT.thresh.label
>>>>>>> rh.BA44.thresh.label rh.V2.label
>>>>>>> lh.BA3b.label lh.perirhinal.label rh.BA45.label
>>>>>>> rh.V2.thresh.label
>>>>>>> lh.BA3b.thresh.label lh.V1.label
>>>>>>> rh.BA45.thresh.label Testing1.label
>>>>>>> lh.BA44.label lh.V1.thresh.label rh.BA4a.label
>>>>>>> Testing.label
>>>>>>> lh.BA44.thresh.label lh.V2.label
>>>>>>> rh.BA4a.thresh.label
>>>>>>>
>>>>>>> Thanks,
>>>>>>> Anna
>>>>>>> ________________________________________
>>>>>>> From: freesurfer-boun...@nmr.mgh.harvard.edu
>>>>>>> [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of dgw
>>>>>>> [dgwake...@gmail.com]
>>>>>>> Sent: Tuesday, September 27, 2016 11:52 AM
>>>>>>> To: Freesurfer support list
>>>>>>> Subject: Re: [Freesurfer] Co-registering different source data
>>>>>>>
>>>>>>> what is the output of "ls"?
>>>>>>>
>>>>>>>
>>>>>>> On 9/27/16 11:50 AM, Crawford, Anna wrote:
>>>>>>>> Thank you. That worked for changing the default directory. When I run
>>>>>>>> mri_label2label, I am still getting the same error that there is no
>>>>>>>> such file or directory for the label.
>>>>>>>>
>>>>>>>> Anna
>>>>>>>> ________________________________________
>>>>>>>> From: freesurfer-boun...@nmr.mgh.harvard.edu
>>>>>>>> [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of dgw
>>>>>>>> [dgwake...@gmail.com]
>>>>>>>> Sent: Tuesday, September 27, 2016 11:36 AM
>>>>>>>> To: Freesurfer support list
>>>>>>>> Subject: Re: [Freesurfer] Co-registering different source data
>>>>>>>>
>>>>>>>> Anna, if you are using bash the command is:
>>>>>>>>
>>>>>>>> export SUBJECTS_DIR=<path>
>>>>>>>>
>>>>>>>>
>>>>>>>> On 9/27/16 11:31 AM, Crawford, Anna wrote:
>>>>>>>>> I also tried doing setenv SUBJECTS_DIR <path> but that did not work
>>>>>>>>> either.
>>>>>>>>>
>>>>>>>>> bash: setenv: command not found
>>>>>>>>>
>>>>>>>>> Thanks,
>>>>>>>>> Anna
>>>>>>>>> ________________________________________
>>>>>>>>> From: Crawford, Anna
>>>>>>>>> Sent: Tuesday, September 27, 2016 11:12 AM
>>>>>>>>> To: Freesurfer support list
>>>>>>>>> Subject: RE: [Freesurfer] Co-registering different source data
>>>>>>>>>
>>>>>>>>> If I don't use --sd it uses the default subject directory
>>>>>>>>> (SUBJECTS_DIR /tools/freesurfer/subjects) which is not where my
>>>>>>>>> data is located.
>>>>>>>>>
>>>>>>>>> Thanks,
>>>>>>>>> Anna
>>>>>>>>> ________________________________________
>>>>>>>>> From: freesurfer-boun...@nmr.mgh.harvard.edu
>>>>>>>>> [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas Greve
>>>>>>>>> [gr...@nmr.mgh.harvard.edu]
>>>>>>>>> Sent: Tuesday, September 27, 2016 10:50 AM
>>>>>>>>> To: freesurfer@nmr.mgh.harvard.edu
>>>>>>>>> Subject: Re: [Freesurfer] Co-registering different source data
>>>>>>>>>
>>>>>>>>> Do you need to use the ---sd option? That sets the SUBJECTS_DIR. If
>>>>>>>>> that
>>>>>>>>> is already set properly, then do not use the --sd.
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> On 9/27/16 9:38 AM, Crawford, Anna wrote:
>>>>>>>>>> Hi,
>>>>>>>>>>
>>>>>>>>>> I keep getting an error when I use mri_label2label. Below is my
>>>>>>>>>> input and output. I have tried various paths all the way down to the
>>>>>>>>>> label and above the subject level, but still always get the same
>>>>>>>>>> error. I have also verified it is the path with the label. Why is it
>>>>>>>>>> not recognizing it?
>>>>>>>>>>
>>>>>>>>>> Thank you,
>>>>>>>>>> Anna
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> mri_label2label --sd
>>>>>>>>>> /mnt/netScratch/crawforda/BrainStem/study11074/S2sdt/segfs/label
>>>>>>>>>> --srcsubject segfs --srclabel Testing.label --trgsubject segfs
>>>>>>>>>> --trglabel Testing1N.label --regmethod volume
>>>>>>>>>>
>>>>>>>>>> srclabel = Testing.label
>>>>>>>>>> srcsubject = segfs
>>>>>>>>>> trgsubject = segfs
>>>>>>>>>> trglabel = Testing1N.label
>>>>>>>>>> regmethod = volume
>>>>>>>>>>
>>>>>>>>>> usehash = 1
>>>>>>>>>> Use ProjAbs = 0, 0
>>>>>>>>>> Use ProjFrac = 0, 0
>>>>>>>>>> DoPaint 0
>>>>>>>>>>
>>>>>>>>>> SUBJECTS_DIR
>>>>>>>>>> /mnt/netScratch/crawforda/BrainStem/study11074/S2sdt/segfs/label
>>>>>>>>>> FREESURFER_HOME /tools/freesurfer
>>>>>>>>>> Loading source label.
>>>>>>>>>> No such file or directory
>>>>>>>>>> mri_label2label: could not open label file Testing.label
>>>>>>>>>> No such file or directory
>>>>>>>>>> ERROR reading Testing.label
>>>>>>>>>>
>>>>>>>>>> ________________________________________
>>>>>>>>>> From: freesurfer-boun...@nmr.mgh.harvard.edu
>>>>>>>>>> [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl
>>>>>>>>>> [fis...@nmr.mgh.harvard.edu]
>>>>>>>>>> Sent: Monday, September 26, 2016 6:20 PM
>>>>>>>>>> To: Freesurfer support list
>>>>>>>>>> Subject: Re: [Freesurfer] Co-registering different source data
>>>>>>>>>>
>>>>>>>>>> Hi Anna
>>>>>>>>>>
>>>>>>>>>> freeview now checks (in the dev version I believe) if the label has
>>>>>>>>>> been
>>>>>>>>>> sampled onto the surface and won't crash, but you need to use
>>>>>>>>>> mri_label2label to sample it onto the surface before loading it onto
>>>>>>>>>> the
>>>>>>>>>> inflated surface in freeview
>>>>>>>>>>
>>>>>>>>>> cheers
>>>>>>>>>> Bruce
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> On Mon, 26 Sep 2016, Crawford, Anna wrote:
>>>>>>>>>>
>>>>>>>>>>> Hi,
>>>>>>>>>>>
>>>>>>>>>>> i created a test ROI which saves as a label. Every time I try to
>>>>>>>>>>> load it as a label on the surface (inflated), it crashed FreeView.
>>>>>>>>>>> I'm not sure why it won't load there. I noticed this happens with
>>>>>>>>>>> some other ore-made labels as well. What could be the cause of this?
>>>>>>>>>>>
>>>>>>>>>>> I also tried doing mri_label2vol (to then do vol2surf), but I am
>>>>>>>>>>> getting an errorL option unknown. I did the following:
>>>>>>>>>>>
>>>>>>>>>>> mri_label2vol \ --label Testing.label \ --temp ../mri/brainmask.mgz
>>>>>>>>>>>
>>>>>>>>>>> among other similar variations. Am I just inputting it wrong or am
>>>>>>>>>>> I just missing information?
>>>>>>>>>>>
>>>>>>>>>>> Thank you,
>>>>>>>>>>> Anna
>>>>>>>>>>> ________________________________________
>>>>>>>>>>> From: freesurfer-boun...@nmr.mgh.harvard.edu
>>>>>>>>>>> [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl
>>>>>>>>>>> [fis...@nmr.mgh.harvard.edu]
>>>>>>>>>>> Sent: Monday, September 26, 2016 4:23 PM
>>>>>>>>>>> To: Freesurfer support list
>>>>>>>>>>> Subject: Re: [Freesurfer] Co-registering different source data
>>>>>>>>>>>
>>>>>>>>>>> Hi Anna
>>>>>>>>>>>
>>>>>>>>>>> scuba is very old and deprecated. Try using freeview instead
>>>>>>>>>>>
>>>>>>>>>>> cheers
>>>>>>>>>>> Bruce
>>>>>>>>>>> On Mon, 26 Sep
>>>>>>>>>>> 2016, Crawford, Anna wrote:
>>>>>>>>>>>
>>>>>>>>>>>> To create the volume ROI, I found something that said to use:
>>>>>>>>>>>>
>>>>>>>>>>>> scuba -v $filename
>>>>>>>>>>>>
>>>>>>>>>>>> to then make a new ROI.
>>>>>>>>>>>>
>>>>>>>>>>>> I got en error that I could not open scuba. Is this the correct
>>>>>>>>>>>> way to go about this, or is there some other means that I should
>>>>>>>>>>>> be doing not 'scuba'?
>>>>>>>>>>>>
>>>>>>>>>>>> Thank you,
>>>>>>>>>>>> Anna
>>>>>>>>>>>> ________________________________________
>>>>>>>>>>>> From: freesurfer-boun...@nmr.mgh.harvard.edu
>>>>>>>>>>>> [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl
>>>>>>>>>>>> [fis...@nmr.mgh.harvard.edu]
>>>>>>>>>>>> Sent: Monday, September 26, 2016 1:52 PM
>>>>>>>>>>>> To: Freesurfer support list
>>>>>>>>>>>> Subject: Re: [Freesurfer] Co-registering different source data
>>>>>>>>>>>>
>>>>>>>>>>>> yes, create a volume ROI and you can map it onto the surface using
>>>>>>>>>>>> mri_vol2surf
>>>>>>>>>>>>
>>>>>>>>>>>> cheers
>>>>>>>>>>>> Bruce
>>>>>>>>>>>> On Mon, 26 Sep 2016, Crawford, Anna wrote:
>>>>>>>>>>>>
>>>>>>>>>>>>> For now, I am just trying to get any arbitrary ROI that I define.
>>>>>>>>>>>>> (I'm new to this and am just trying to figure out how to get the
>>>>>>>>>>>>> basic process first.) Eventually, I will want it related to
>>>>>>>>>>>>> another signal such as the EEG from an epilepsy subject for
>>>>>>>>>>>>> example. In that case, it would be the active region that I want
>>>>>>>>>>>>> to capture and then map it to the surface. First, I want to be
>>>>>>>>>>>>> sure that I can get an ROI that I can then project to the surface
>>>>>>>>>>>>> (which I assume would be something like mri_vol2surf) if that
>>>>>>>>>>>>> makes sense. So i first need to be able to create the volume or
>>>>>>>>>>>>> label.
>>>>>>>>>>>>>
>>>>>>>>>>>>> Thank you,
>>>>>>>>>>>>> Anna
>>>>>>>>>>>>> ________________________________________
>>>>>>>>>>>>>
>>>>>>>>>>>>> From: freesurfer-boun...@nmr.mgh.harvard.edu
>>>>>>>>>>>>> [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce
>>>>>>>>>>>>> Fischl [fis...@nmr.mgh.harvard.edu]
>>>>>>>>>>>>> Sent: Monday, September 26, 2016 1:16 PM
>>>>>>>>>>>>> To: Freesurfer support list
>>>>>>>>>>>>> Subject: Re: [Freesurfer] Co-registering different source data
>>>>>>>>>>>>>
>>>>>>>>>>>>> can you explain what the ROI is supposed to represent? If you can
>>>>>>>>>>>>> create
>>>>>>>>>>>>> it in the volume, you can use mri_vol2surf to map it onto the
>>>>>>>>>>>>> surface.
>>>>>>>>>>>>>
>>>>>>>>>>>>> cheers
>>>>>>>>>>>>> Bruce
>>>>>>>>>>>>>
>>>>>>>>>>>>>
>>>>>>>>>>>>> On Mon, 26 Sep 2016, Crawford, Anna wrote:
>>>>>>>>>>>>>
>>>>>>>>>>>>>> Hi,
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> I am having trouble figuring out how to create my own ROI. I can
>>>>>>>>>>>>>> visualize the anatomical ROI created automatically. How do I
>>>>>>>>>>>>>> create a new ROI?
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> Thanks,
>>>>>>>>>>>>>> Anna
>>>>>>>>>>>>>> ________________________________________
>>>>>>>>>>>>>> From: freesurfer-boun...@nmr.mgh.harvard.edu
>>>>>>>>>>>>>> [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce
>>>>>>>>>>>>>> Fischl [fis...@nmr.mgh.harvard.edu]
>>>>>>>>>>>>>> Sent: Monday, September 26, 2016 10:44 AM
>>>>>>>>>>>>>> To: Freesurfer support list
>>>>>>>>>>>>>> Subject: Re: [Freesurfer] Co-registering different source data
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> Hi Anna
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> I'm not exactly sure what you mean, but if you register EEG
>>>>>>>>>>>>>> electrodes to
>>>>>>>>>>>>>> the white or pial surface, then you can visualize them on the
>>>>>>>>>>>>>> inflated
>>>>>>>>>>>>>> surface trivially. That is, you can create your ROI on any
>>>>>>>>>>>>>> surface of the
>>>>>>>>>>>>>> same hemisphere/subject and visualize it on any other
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> cheers
>>>>>>>>>>>>>> Bruce
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> On Mon, 26 Sep 2016, Crawford, Anna
>>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> Hello,
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> I am trying to create a new surface area on the inflated brain
>>>>>>>>>>>>>>> given by freesurfer
>>>>>>>>>>>>>>> using recon-all. I make to create my own ROI that is
>>>>>>>>>>>>>>> co-registered onto this surfer.
>>>>>>>>>>>>>>> Ultimately, I want to be able to take information from a
>>>>>>>>>>>>>>> different data source such as
>>>>>>>>>>>>>>> EEG and have it co-registered onto the inflated surface. How do
>>>>>>>>>>>>>>> I go about creating
>>>>>>>>>>>>>>> this new ROI surface?
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> Thanks,
>>>>>>>>>>>>>>> Anna
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> ===================================
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>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>>> Freesurfer mailing list
>>>>>>>>>>>>>> Freesurfer@nmr.mgh.harvard.edu
>>>>>>>>>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> The information in this e-mail is intended only for the person
>>>>>>>>>>>>>> to whom it is
>>>>>>>>>>>>>> addressed. If you believe this e-mail was sent to you in error
>>>>>>>>>>>>>> and the e-mail
>>>>>>>>>>>>>> contains patient information, please contact the Partners
>>>>>>>>>>>>>> Compliance HelpLine at
>>>>>>>>>>>>>> http://www.partners.org/complianceline . If the e-mail was sent
>>>>>>>>>>>>>> to you in error
>>>>>>>>>>>>>> but does not contain patient information, please contact the
>>>>>>>>>>>>>> sender and properly
>>>>>>>>>>>>>> dispose of the e-mail.
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> ===================================
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> Please consider the environment before printing this e-mail
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> Cleveland Clinic is ranked as one of the top hospitals in
>>>>>>>>>>>>>> America by U.S.News & World Report (2015).
>>>>>>>>>>>>>> Visit us online at http://www.clevelandclinic.org for a complete
>>>>>>>>>>>>>> listing of our services, staff and locations.
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> Confidentiality Note: This message is intended for use only by
>>>>>>>>>>>>>> the individual or entity to which it is addressed and may
>>>>>>>>>>>>>> contain information that is privileged, confidential, and exempt
>>>>>>>>>>>>>> from disclosure under applicable law. If the reader of this
>>>>>>>>>>>>>> message is not the intended recipient or the employee or agent
>>>>>>>>>>>>>> responsible for delivering the message to the intended
>>>>>>>>>>>>>> recipient, you are hereby notified that any dissemination,
>>>>>>>>>>>>>> distribution or copying of this communication is strictly
>>>>>>>>>>>>>> prohibited. If you have received this communication in error,
>>>>>>>>>>>>>> please contact the sender immediately and destroy the material
>>>>>>>>>>>>>> in its entirety, whether electronic or hard copy.
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> Thank you.
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>>> Freesurfer mailing list
>>>>>>>>>>>>>> Freesurfer@nmr.mgh.harvard.edu
>>>>>>>>>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>
>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>> Freesurfer mailing list
>>>>>>>>>>>>> Freesurfer@nmr.mgh.harvard.edu
>>>>>>>>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>>>>>>>>>>>
>>>>>>>>>>>>> ===================================
>>>>>>>>>>>>>
>>>>>>>>>>>>>
>>>>>>>>>>>>> Please consider the environment before printing this e-mail
>>>>>>>>>>>>>
>>>>>>>>>>>>> Cleveland Clinic is ranked as one of the top hospitals in America
>>>>>>>>>>>>> by U.S.News & World Report (2015).
>>>>>>>>>>>>> Visit us online at http://www.clevelandclinic.org for a complete
>>>>>>>>>>>>> listing of our services, staff and locations.
>>>>>>>>>>>>>
>>>>>>>>>>>>>
>>>>>>>>>>>>> Confidentiality Note: This message is intended for use only by
>>>>>>>>>>>>> the individual or entity to which it is addressed and may contain
>>>>>>>>>>>>> information that is privileged, confidential, and exempt from
>>>>>>>>>>>>> disclosure under applicable law. If the reader of this message
>>>>>>>>>>>>> is not the intended recipient or the employee or agent
>>>>>>>>>>>>> responsible for delivering the message to the intended recipient,
>>>>>>>>>>>>> you are hereby notified that any dissemination, distribution or
>>>>>>>>>>>>> copying of this communication is strictly prohibited. If you
>>>>>>>>>>>>> have received this communication in error, please contact the
>>>>>>>>>>>>> sender immediately and destroy the material in its entirety,
>>>>>>>>>>>>> whether electronic or hard copy.
>>>>>>>>>>>>>
>>>>>>>>>>>>> Thank you.
>>>>>>>>>>>>>
>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>> Freesurfer mailing list
>>>>>>>>>>>>> Freesurfer@nmr.mgh.harvard.edu
>>>>>>>>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>>>>>>>>>>>
>>>>>>>>>>>>>
>>>>>>>>>>>>>
>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>> Freesurfer mailing list
>>>>>>>>>>>> Freesurfer@nmr.mgh.harvard.edu
>>>>>>>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>>>>>>>>>>
>>>>>>>>>>>> ===================================
>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>> Please consider the environment before printing this e-mail
>>>>>>>>>>>>
>>>>>>>>>>>> Cleveland Clinic is ranked as one of the top hospitals in America
>>>>>>>>>>>> by U.S.News & World Report (2015).
>>>>>>>>>>>> Visit us online at http://www.clevelandclinic.org for a complete
>>>>>>>>>>>> listing of our services, staff and locations.
>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>> Confidentiality Note: This message is intended for use only by
>>>>>>>>>>>> the individual or entity to which it is addressed and may contain
>>>>>>>>>>>> information that is privileged, confidential, and exempt from
>>>>>>>>>>>> disclosure under applicable law. If the reader of this message is
>>>>>>>>>>>> not the intended recipient or the employee or agent responsible
>>>>>>>>>>>> for delivering the message to the intended recipient, you are
>>>>>>>>>>>> hereby notified that any dissemination, distribution or copying of
>>>>>>>>>>>> this communication is strictly prohibited. If you have received
>>>>>>>>>>>> this communication in error, please contact the sender
>>>>>>>>>>>> immediately and destroy the material in its entirety, whether
>>>>>>>>>>>> electronic or hard copy.
>>>>>>>>>>>>
>>>>>>>>>>>> Thank you.
>>>>>>>>>>>>
>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>> Freesurfer mailing list
>>>>>>>>>>>> Freesurfer@nmr.mgh.harvard.edu
>>>>>>>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>> _______________________________________________
>>>>>>>>>>> Freesurfer mailing list
>>>>>>>>>>> Freesurfer@nmr.mgh.harvard.edu
>>>>>>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>>>>>>>>>
>>>>>>>>>>> ===================================
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> Please consider the environment before printing this e-mail
>>>>>>>>>>>
>>>>>>>>>>> Cleveland Clinic is ranked as one of the top hospitals in America
>>>>>>>>>>> by U.S.News & World Report (2015).
>>>>>>>>>>> Visit us online at http://www.clevelandclinic.org for a complete
>>>>>>>>>>> listing of our services, staff and locations.
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> Confidentiality Note: This message is intended for use only by the
>>>>>>>>>>> individual or entity to which it is addressed and may contain
>>>>>>>>>>> information that is privileged, confidential, and exempt from
>>>>>>>>>>> disclosure under applicable law. If the reader of this message is
>>>>>>>>>>> not the intended recipient or the employee or agent responsible for
>>>>>>>>>>> delivering the message to the intended recipient, you are hereby
>>>>>>>>>>> notified that any dissemination, distribution or copying of this
>>>>>>>>>>> communication is strictly prohibited. If you have received this
>>>>>>>>>>> communication in error, please contact the sender immediately and
>>>>>>>>>>> destroy the material in its entirety, whether electronic or hard
>>>>>>>>>>> copy.
>>>>>>>>>>>
>>>>>>>>>>> Thank you.
>>>>>>>>>>>
>>>>>>>>>>> _______________________________________________
>>>>>>>>>>> Freesurfer mailing list
>>>>>>>>>>> Freesurfer@nmr.mgh.harvard.edu
>>>>>>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>> _______________________________________________
>>>>>>>>>> Freesurfer mailing list
>>>>>>>>>> Freesurfer@nmr.mgh.harvard.edu
>>>>>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>>>>>>>>
>>>>>>>>>> ===================================
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> Please consider the environment before printing this e-mail
>>>>>>>>>>
>>>>>>>>>> Cleveland Clinic is ranked as one of the top hospitals in America by
>>>>>>>>>> U.S.News & World Report (2015).
>>>>>>>>>> Visit us online at http://www.clevelandclinic.org for a complete
>>>>>>>>>> listing of our services, staff and locations.
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> Confidentiality Note: This message is intended for use only by the
>>>>>>>>>> individual or entity to which it is addressed and may contain
>>>>>>>>>> information that is privileged, confidential, and exempt from
>>>>>>>>>> disclosure under applicable law. If the reader of this message is
>>>>>>>>>> not the intended recipient or the employee or agent responsible for
>>>>>>>>>> delivering the message to the intended recipient, you are hereby
>>>>>>>>>> notified that any dissemination, distribution or copying of this
>>>>>>>>>> communication is strictly prohibited. If you have received this
>>>>>>>>>> communication in error, please contact the sender immediately and
>>>>>>>>>> destroy the material in its entirety, whether electronic or hard
>>>>>>>>>> copy.
>>>>>>>>>>
>>>>>>>>>> Thank you.
>>>>>>>>>>
>>>>>>>>>> _______________________________________________
>>>>>>>>>> Freesurfer mailing list
>>>>>>>>>> Freesurfer@nmr.mgh.harvard.edu
>>>>>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>> _______________________________________________
>>>>>>>>> Freesurfer mailing list
>>>>>>>>> Freesurfer@nmr.mgh.harvard.edu
>>>>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>>>>>>>
>>>>>>>>> ===================================
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> Please consider the environment before printing this e-mail
>>>>>>>>>
>>>>>>>>> Cleveland Clinic is ranked as one of the top hospitals in America by
>>>>>>>>> U.S.News & World Report (2015).
>>>>>>>>> Visit us online at http://www.clevelandclinic.org for a complete
>>>>>>>>> listing of our services, staff and locations.
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> Confidentiality Note: This message is intended for use only by the
>>>>>>>>> individual or entity to which it is addressed and may contain
>>>>>>>>> information that is privileged, confidential, and exempt from
>>>>>>>>> disclosure under applicable law. If the reader of this message is
>>>>>>>>> not the intended recipient or the employee or agent responsible for
>>>>>>>>> delivering the message to the intended recipient, you are hereby
>>>>>>>>> notified that any dissemination, distribution or copying of this
>>>>>>>>> communication is strictly prohibited. If you have received this
>>>>>>>>> communication in error, please contact the sender immediately and
>>>>>>>>> destroy the material in its entirety, whether electronic or hard copy.
>>>>>>>>>
>>>>>>>>> Thank you.
>>>>>>>>>
>>>>>>>>> _______________________________________________
>>>>>>>>> Freesurfer mailing list
>>>>>>>>> Freesurfer@nmr.mgh.harvard.edu
>>>>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>>>>>>>
>>>>>>>> _______________________________________________
>>>>>>>> Freesurfer mailing list
>>>>>>>> Freesurfer@nmr.mgh.harvard.edu
>>>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>>>>>>
>>>>>>>> ===================================
>>>>>>>>
>>>>>>>>
>>>>>>>> Please consider the environment before printing this e-mail
>>>>>>>>
>>>>>>>> Cleveland Clinic is ranked as one of the top hospitals in America by
>>>>>>>> U.S.News & World Report (2015).
>>>>>>>> Visit us online at http://www.clevelandclinic.org for a complete
>>>>>>>> listing of our services, staff and locations.
>>>>>>>>
>>>>>>>>
>>>>>>>> Confidentiality Note: This message is intended for use only by the
>>>>>>>> individual or entity to which it is addressed and may contain
>>>>>>>> information that is privileged, confidential, and exempt from
>>>>>>>> disclosure under applicable law. If the reader of this message is not
>>>>>>>> the intended recipient or the employee or agent responsible for
>>>>>>>> delivering the message to the intended recipient, you are hereby
>>>>>>>> notified that any dissemination, distribution or copying of this
>>>>>>>> communication is strictly prohibited. If you have received this
>>>>>>>> communication in error, please contact the sender immediately and
>>>>>>>> destroy the material in its entirety, whether electronic or hard copy.
>>>>>>>>
>>>>>>>> Thank you.
>>>>>>>>
>>>>>>>> _______________________________________________
>>>>>>>> Freesurfer mailing list
>>>>>>>> Freesurfer@nmr.mgh.harvard.edu
>>>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>>>>>>
>>>>>>> _______________________________________________
>>>>>>> Freesurfer mailing list
>>>>>>> Freesurfer@nmr.mgh.harvard.edu
>>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>>>>>
>>>>>>> ===================================
>>>>>>>
>>>>>>>
>>>>>>> Please consider the environment before printing this e-mail
>>>>>>>
>>>>>>> Cleveland Clinic is ranked as one of the top hospitals in America by
>>>>>>> U.S.News & World Report (2015).
>>>>>>> Visit us online at http://www.clevelandclinic.org for a complete
>>>>>>> listing of our services, staff and locations.
>>>>>>>
>>>>>>>
>>>>>>> Confidentiality Note: This message is intended for use only by the
>>>>>>> individual or entity to which it is addressed and may contain
>>>>>>> information that is privileged, confidential, and exempt from
>>>>>>> disclosure under applicable law. If the reader of this message is not
>>>>>>> the intended recipient or the employee or agent responsible for
>>>>>>> delivering the message to the intended recipient, you are hereby
>>>>>>> notified that any dissemination, distribution or copying of this
>>>>>>> communication is strictly prohibited. If you have received this
>>>>>>> communication in error, please contact the sender immediately and
>>>>>>> destroy the material in its entirety, whether electronic or hard copy.
>>>>>>>
>>>>>>> Thank you.
>>>>>>>
>>>>>>> _______________________________________________
>>>>>>> Freesurfer mailing list
>>>>>>> Freesurfer@nmr.mgh.harvard.edu
>>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>>>>>
>>>>>> _______________________________________________
>>>>>> Freesurfer mailing list
>>>>>> Freesurfer@nmr.mgh.harvard.edu
>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>>>>
>>>>>> ===================================
>>>>>>
>>>>>>
>>>>>> Please consider the environment before printing this e-mail
>>>>>>
>>>>>> Cleveland Clinic is ranked as one of the top hospitals in America by
>>>>>> U.S.News & World Report (2015).
>>>>>> Visit us online at http://www.clevelandclinic.org for a complete listing
>>>>>> of our services, staff and locations.
>>>>>>
>>>>>>
>>>>>> Confidentiality Note: This message is intended for use only by the
>>>>>> individual or entity to which it is addressed and may contain
>>>>>> information that is privileged, confidential, and exempt from disclosure
>>>>>> under applicable law. If the reader of this message is not the intended
>>>>>> recipient or the employee or agent responsible for delivering the
>>>>>> message to the intended recipient, you are hereby notified that any
>>>>>> dissemination, distribution or copying of this communication is strictly
>>>>>> prohibited. If you have received this communication in error, please
>>>>>> contact the sender immediately and destroy the material in its entirety,
>>>>>> whether electronic or hard copy.
>>>>>>
>>>>>> Thank you.
>>>>>>
>>>>>> _______________________________________________
>>>>>> Freesurfer mailing list
>>>>>> Freesurfer@nmr.mgh.harvard.edu
>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>>>>
>>>>>>
>>>>>>
>>>>> _______________________________________________
>>>>> Freesurfer mailing list
>>>>> Freesurfer@nmr.mgh.harvard.edu
>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>>>
>>>>> ===================================
>>>>>
>>>>>
>>>>> Please consider the environment before printing this e-mail
>>>>>
>>>>> Cleveland Clinic is ranked as one of the top hospitals in America by
>>>>> U.S.News & World Report (2015).
>>>>> Visit us online at http://www.clevelandclinic.org for a complete listing
>>>>> of our services, staff and locations.
>>>>>
>>>>>
>>>>> Confidentiality Note: This message is intended for use only by the
>>>>> individual or entity to which it is addressed and may contain information
>>>>> that is privileged, confidential, and exempt from disclosure under
>>>>> applicable law. If the reader of this message is not the intended
>>>>> recipient or the employee or agent responsible for delivering the message
>>>>> to the intended recipient, you are hereby notified that any
>>>>> dissemination, distribution or copying of this communication is strictly
>>>>> prohibited. If you have received this communication in error, please
>>>>> contact the sender immediately and destroy the material in its entirety,
>>>>> whether electronic or hard copy.
>>>>>
>>>>> Thank you.
>>>>>
>>>>> _______________________________________________
>>>>> Freesurfer mailing list
>>>>> Freesurfer@nmr.mgh.harvard.edu
>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>>>
>>>>>
>>>> _______________________________________________
>>>> Freesurfer mailing list
>>>> Freesurfer@nmr.mgh.harvard.edu
>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>>
>>>> ===================================
>>>>
>>>>
>>>> Please consider the environment before printing this e-mail
>>>>
>>>> Cleveland Clinic is ranked as one of the top hospitals in America by
>>>> U.S.News & World Report (2015).
>>>> Visit us online at http://www.clevelandclinic.org for a complete listing
>>>> of our services, staff and locations.
>>>>
>>>>
>>>> Confidentiality Note: This message is intended for use only by the
>>>> individual or entity to which it is addressed and may contain information
>>>> that is privileged, confidential, and exempt from disclosure under
>>>> applicable law. If the reader of this message is not the intended
>>>> recipient or the employee or agent responsible for delivering the message
>>>> to the intended recipient, you are hereby notified that any dissemination,
>>>> distribution or copying of this communication is strictly prohibited. If
>>>> you have received this communication in error, please contact the sender
>>>> immediately and destroy the material in its entirety, whether electronic
>>>> or hard copy.
>>>>
>>>> Thank you.
>>>>
>>>> _______________________________________________
>>>> Freesurfer mailing list
>>>> Freesurfer@nmr.mgh.harvard.edu
>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>>
>>>>
>>>>
>>> _______________________________________________
>>> Freesurfer mailing list
>>> Freesurfer@nmr.mgh.harvard.edu
>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>
>>> ===================================
>>>
>>>
>>> Please consider the environment before printing this e-mail
>>>
>>> Cleveland Clinic is ranked as one of the top hospitals in America by
>>> U.S.News & World Report (2015).
>>> Visit us online at http://www.clevelandclinic.org for a complete listing of
>>> our services, staff and locations.
>>>
>>>
>>> Confidentiality Note: This message is intended for use only by the
>>> individual or entity to which it is addressed and may contain information
>>> that is privileged, confidential, and exempt from disclosure under
>>> applicable law. If the reader of this message is not the intended
>>> recipient or the employee or agent responsible for delivering the message
>>> to the intended recipient, you are hereby notified that any dissemination,
>>> distribution or copying of this communication is strictly prohibited. If
>>> you have received this communication in error, please contact the sender
>>> immediately and destroy the material in its entirety, whether electronic or
>>> hard copy.
>>>
>>> Thank you.
>>>
>>> _______________________________________________
>>> Freesurfer mailing list
>>> Freesurfer@nmr.mgh.harvard.edu
>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>
>>>
>>>
>> _______________________________________________
>> Freesurfer mailing list
>> Freesurfer@nmr.mgh.harvard.edu
>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>
>> ===================================
>>
>>
>> Please consider the environment before printing this e-mail
>>
>> Cleveland Clinic is ranked as one of the top hospitals in America by
>> U.S.News & World Report (2015).
>> Visit us online at http://www.clevelandclinic.org for a complete listing of
>> our services, staff and locations.
>>
>>
>> Confidentiality Note: This message is intended for use only by the
>> individual or entity to which it is addressed and may contain information
>> that is privileged, confidential, and exempt from disclosure under
>> applicable law. If the reader of this message is not the intended recipient
>> or the employee or agent responsible for delivering the message to the
>> intended recipient, you are hereby notified that any dissemination,
>> distribution or copying of this communication is strictly prohibited. If
>> you have received this communication in error, please contact the sender
>> immediately and destroy the material in its entirety, whether electronic or
>> hard copy.
>>
>> Thank you.
>>
>> _______________________________________________
>> Freesurfer mailing list
>> Freesurfer@nmr.mgh.harvard.edu
>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>
>>
> --
> Douglas N. Greve, Ph.D.
> MGH-NMR Center
> gr...@nmr.mgh.harvard.edu
> Phone Number: 617-724-2358
> Fax: 617-726-7422
>
> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
> ===================================
>
>
> Please consider the environment before printing this e-mail
>
> Cleveland Clinic is ranked as one of the top hospitals in America by U.S.News
> & World Report (2015).
> Visit us online at http://www.clevelandclinic.org for a complete listing of
> our services, staff and locations.
>
>
> Confidentiality Note: This message is intended for use only by the
> individual or entity to which it is addressed and may contain information
> that is privileged, confidential, and exempt from disclosure under applicable
> law. If the reader of this message is not the intended recipient or the
> employee or agent responsible for delivering the message to the intended
> recipient, you are hereby notified that any dissemination, distribution or
> copying of this communication is strictly prohibited. If you have received
> this communication in error, please contact the sender immediately and
> destroy the material in its entirety, whether electronic or hard copy.
>
> Thank you.
>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
