that's true, but if the white matter surface is already correct you can
change some of the intensity bounds in mris_make_surfaces. The
automatically calculated ones will be in the recon-all.log and you should
check them before changing them
cheers
Bruce
On Fri, 30 Sep 2016, Trisanna
Sprung-Much wrote:
Hi there
To my understanding, if you want to edit the pial (push it outwards more)
then you need to edit the white matter, as the pial is made from the white
matter surface. You can do this by manually extending the white matter
surface and re-running your surfaces.
Trisanna
--
Ph.D. CandidateMcGill University
Integrated Program in Neuroscience
Psychology
On Fri, Sep 30, 2016 at 12:07 PM, Seung Gul Kang <sg.kang...@gmail.com>
wrote:
Hi Freesurfer expert,
I am doing visual editing.
In some subjects, the pial surface border is somewhat narrow (within
the border of graymatter in my view) although there is no skull
stripping error.
I heard that adding the control point might extend the border of
graymatter as well as that of white matter from other researcher.
Is it true?
Or, is there other way to edit to extend the pial surface border?
Thank you.
Best,
Seung-Gul
---
Seung Gul Kang, M.D., Ph.D.
Psychiatrist, Associate Professor; Department of Psychiatry, Gil
Medical Center, Gachon University, School of Medicine, 21,
Namdong-daero 774 beon-gil, Namdong-gu, Incheon, 21565, South Korea
Research scholar; Sleep Disorders Clinical Research Program,
Department of Psychiatry, Massachusetts General Hospital, Harvard
Medical School, 1 Bowdoin Square, 9th floor, Boston, MA 02114, USA
Collaboration researcher; Division of Sleep & Circadian Disorders,
Brigham & Women's Hospital, Harvard Medical School, 221 Longwood Ave,
Boston MA 02115
[t?sender=ac2cua2FuZzQyMkBnbWFpbC5jb20%3D&type=zerocontent&guid=a9fadef6-6c
71-43eb-bd31-0c372e27c0d6] ᐧ
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom
it is
addressed. If you believe this e-mail was sent to you in error and the
e-mail
contains patient information, please contact the Partners Compliance
HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you
in error
but does not contain patient information, please contact the sender
and properly
dispose of the e-mail.
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
