Dear Sebastian, I suspect that you might be using the version from late 2015. Please download the recently released beta from here: https://surfer.nmr.mgh.harvard.edu/fswiki/DownloadAndInstall6.0-beta Cheers, /Eugenio
Juan Eugenio Iglesias ERC Senior Research Fellow Translational Imaging Group University College London http://www.jeiglesias.com http://cmictig.cs.ucl.ac.uk/ On 2 Dec 2016, at 13:33, Sebastian Huhn <[email protected]<mailto:[email protected]>> wrote: Dear Eugenio, thanks for your fast response. I am using FS 6.0.0beta (ubuntu-xenial-amd64). Best, Sebastian ----- Original Message ----- From: "Iglesias Gonzalez, Eugenio" <[email protected]<mailto:[email protected]>> To: "Freesurfer support list" <[email protected]<mailto:[email protected]>> Sent: Friday, December 2, 2016 2:23:15 PM Subject: Re: [Freesurfer] HC Subfields LongHippo Dear Sebastian, Are you using a dev version? If you are using the 6.0 beta, the command should definitely be there. Can you please send me the exact version you’re using? Cheers, /Eugenio Juan Eugenio Iglesias ERC Senior Research Fellow Translational Imaging Group University College London http://www.jeiglesias.com http://cmictig.cs.ucl.ac.uk/ On 2 Dec 2016, at 12:01, Sebastian Huhn < [email protected]<mailto:[email protected]> > wrote: Dear Freesurfer Community, I ran the Freesurfer longitudinal pipeline for my subjects (7T, T1_data, 2 timepoints each). Now I want to continue with the longitudinal segmentation of hippocampal subfields: https://surfer.nmr.mgh.harvard.edu/fswiki/LongitudinalHippocampalSubfields However, when I want to run the command: longHippoSubfieldsT1.sh <baseID> I get the error message "bash: longHippoSubfieldsT1.sh: command not found" First thing I did, was checking the Freesurfer folder for the longHippo..sh file. I am using FS 6.0 but the file is not available. So my questions: where can I get the file longHippoSubfieldsT1.sh or what else can I do to proceed with the HC subfield segmentation? Thanks a lot for your support Best Sebastian _______________________________________________ Freesurfer mailing list [email protected]<mailto:[email protected]> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. _______________________________________________ Freesurfer mailing list [email protected]<mailto:[email protected]> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. _______________________________________________ Freesurfer mailing list [email protected]<mailto:[email protected]> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
