You can run it like that or with --osgm (instead of --fsgd and --C), osgm = one sample group mean.
On 12/01/2016 07:13 PM, Foo Keat Mak wrote: > Hi Doug, > I have pasted the correspondences below. My question is, if I want to > identify the PCs in a group for a single modality (PET), how should I > run the mri_glmfit? A single group design with A contrast of 1 0 (for > a nuisance covariate)? > Thanks ! > Elijah > Doug: > For within modality, you can add --pca to mri_glmfit (run it with > --help to get more info). We do not have ICA tools in FS. > On 12/01/2016 02:04 PM, Foo Keat Mak wrote: > Hi Freesurfer Team, > > > For a given group, I want to look at the covariance patterns between > > thickness and PET. Within Freesurfer, what are some general workflow > > tips on how I could go about performing PCA (within modality) or joint > > ICA analyses looking at the covariance patterns across modalities? > Is > the -pca flag a good starting point? > > Any feedback is > appreciated! > > Thanks a lot. > > Best Wishes, > Elijah > > > > _______________________________________________ > Freesurfer mailing > list > Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- > Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu > <http://nmr.mgh.harvard.edu> Phone Number: 617-724-2358 Fax: > 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> FileDrop: > https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > Outgoing: > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > _______________________________________________ Freesurfer mailing > list Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The > information in this e-mail is intended only for the person to whom it > is addressed. If you believe this e-mail was sent to you in error and > the e-mail contains patient information, please contact the Partners > Compliance HelpLine at http://www.partners.org/complianceline . If the > e-mail was sent to you in error but does not contain patient > information, please contact the sender and properly dispose of the e-mail. > > > Sent from my iPad > > On 1 Dec 2016, at 23:30, Foo Keat Mak <fk...@medschl.cam.ac.uk > <mailto:fk...@medschl.cam.ac.uk>> wrote: > >> Thanks Doug. Does that mean that a one group design? With a contrast >> of 1 0 (adjusting for one variable)? >> >> > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
