Also if I try to avoid this step I get a new error I don't know if this adds helpful insight!
fslswapdim /media/Data/Temple/Temple_Tracula/31313422_10128/dmri/b0pha.nii.gz x -y z /media/Data/Temple/Temple_Tracula/31313422_10128/dmri/b0pha.nii.gz INFO: left-right orientation was flipped by fslswapdim fslorient -forceradiological /media/Data/Temple/Temple_Tracula/31313422_10128/dmri/b0pha.nii.gz mri_probedicom --i //media/Data/Temple/Temple_Tracula/31313422_10128/dti_dicom/31313422_10128.MR.Temple.9.1.20140806.182244.xfrp16.dcm > /media/Data/Temple/Temple_Tracula/31313422_10128/dmri/b0info.dat TE: Subscript out of range. fslroi /media/Data/Temple/Temple_Tracula/31313422_10128/dmri/dwi_eddy.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10128/dmri/lowb.nii.gz 0 1 ERROR: Unrecognized format of phase map /media/Data/Temple/Temple_Tracula/31313422_10128/dmri/b0pha.nii.gz On Sat, Dec 3, 2016 at 2:42 PM, Katherine Damme <[email protected]> wrote: > Hello! > > I have been getting a "set: No match." error. I haven't been able to sort > out what is causing it. > > Attached you will find the configuration file, command, and log files > associated with this error. > > "mv -f /media/Data/Temple/Temple_Tracula/31313422_10128/dmri/bvecs > /media/Data/Temple/Temple_Tracula/31313422_10128/dmri/bvecs.norot > xfmrot /media/Data/Temple/Temple_Tracula/31313422_10128/dmri/dwi.ecclog > /media/Data/Temple/Temple_Tracula/31313422_10128/dmri/bvecs.norot > /media/Data/Temple/Temple_Tracula/31313422_10128/dmri/bvecs > set: No match." >
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