Hi Doug, Yes i was visualising it on fsaverage. I switched to sub003 and the ROI looks perfect. What a simple mistake, thanks for your help. Kind regards, Bronwyn Overs Research Assistant
Neuroscience Research Australia Margarete Ainsworth Building Barker Street Randwick Sydney NSW 2031 Australia M 0411 308 769 T +61 2 9399 1883 F +61 2 9399 1265 neura.edu.au <http://neura.edu.au/> <https://twitter.com/neuraustralia> <https://www.facebook.com/NeuroscienceResearchAustralia> <http://www.neura.edu.au/help-research/subscribe> > On 27 Jan 2017, at 10:26 am, Douglas N Greve <[email protected]> > wrote: > > Are you visualizing the output on subject sub003? It looks like fsaverage > > > On 01/26/2017 06:23 PM, Bronwyn Overs wrote: >> Hi Mailing list, >> >> I have been running the mri_label2label command and have encountered a >> problem with the newly generated label. The command I am running is as >> follows: >> >> mri_label2label --srclabel >> "$SUBJECTS_DIR/fsaverage/label/lh.sm20.lme.test.B2-0001.label" >> --srcsubject fsaverage_mod --trglabel "Test.label" --trgsubject >> “sub003" --regmethod surface --hemi lh >> >> When I visualise the original label there is a distinct temporal ROI >> outlined. However, when I load the label for my individual >> subject there is no temporal ROI outlined, instead I see numerous >> widely dispersed vertices highlighted across the whole surface of the >> cortex. Can you identify what the issue is? I have attached images >> that show the input and output labels overlayed on an inflated surface. >> >> >> >> >> >> Kind regards, >> >> Bronwyn Overs >> Research Assistant >> >> Neuroscience Research Australia >> >> Neuroscience Research Australia >> Margarete Ainsworth Building >> Barker Street Randwick Sydney NSW 2031 Australia >> *M* 0411 308 769 *T* +61 2 9399 1883 *F* +61 2 9399 1265 >> >> neura.edu.au <http://neura.edu.au/> <http://neura.edu.au >> <http://neura.edu.au/>> >> >> Follow @neuraustralia on twitter >> <https://twitter.com/neuraustralia >> <https://twitter.com/neuraustralia>>Follow NeuRA on facebook >> <https://www.facebook.com/NeuroscienceResearchAustralia >> <https://www.facebook.com/NeuroscienceResearchAustralia>>Subscribe to >> the NeuRA Magazine <http://www.neura.edu.au/help-research/subscribe >> <http://www.neura.edu.au/help-research/subscribe>> >> >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> [email protected] <mailto:[email protected]> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > [email protected] <mailto:[email protected]> > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > <https://gate.nmr.mgh.harvard.edu/filedrop2> > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/> > > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail.
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