yes it does, and it should significantly reduce execution time unless you
don't have multiple cores
cheers
Bruce
On Sat, 4 Feb 2017, Aziz
Nanthaamornphong wrote:
Hi Bruce,
Does FS6 support the 'openmp 8' flag? I tried to use this flag with 'recon-all
-all' on FS6, but it took
longer time for only one subject.
Thank you,
Aziz.
On Fri, Feb 3, 2017 at 10:16 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu>
wrote:
Hi Aziz
with multiple course you can specify -openmp 8 for exmaple to use 8
cores, which speeds
things up a lot. It also depends how many recons you will be running at
the same time. A 16
core machine with 64G of ram would be able to run 4 recons in a few hours
each.
cheers
Bruce
On Fri, 3 Feb 2017, Aziz Nanthaamornphong wrote:
Hi experts,
I would like to find a new high-performance computer to run the
reconstruction
process in Freesurfer.
Currently, I used a single computer (Intel core i7, RAM 8MB) to run
the commands
(e.g., 'recon-all -all'
) that spent average time 7-9 hours per one subject data.
Please let me know what the best spec of the computer that can
reduce the time
to 2-3 hours (if
possible).
Thank you,
Aziz
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
--
Aziz Nanthaamornphong, Ph.D.,
Chair of Master of Science Program in Information Technology
Department of ICT
Faculty of Technology and Environment
Prince of Songkla University, Phuket Campus
+66 7627 6716 (v)
http://research.te.psu.ac.th/aziz
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
