Hi Bruce, Does 'entire subject directory tree' means that the subject’s data containing all preprocessed results before i run FREESURFER? not only raw T1 and T2 file?
Thank you, Juhyoung. > On Feb 7, 2017, at 10:36 AM, Bruce Fischl <[email protected]> wrote: > > Hi Juhyoung > > can you tar and gzip the entire subject directory tree and upload that? > > thanks > Bruce > > On Tue, 7 Feb 2017, Juhyoung Ryu wrote: > >> I uploaded 3 set of T1.nii and T2.nii files for 3 example subjects. >> You can get subject information here : T1_CUBEE{#subject}.nii >> >> #0001 data success FS processing and #0002 / #0010 data is failed. >> - Success: 0001 >> - Failed: 0010, 0002 >> >> I did FREESURFER processing using both T1 and T2 data after preprocessing >> and downsampling from 0.85mm to 1mm resolution. >> >> Thank you in advance for any help, >> Juhyoung >> >>> On Feb 6, 2017, at 11:39 PM, Bruce Fischl <[email protected]> >>> wrote: >>> >>> Hi Juhyoung >>> >>> can you upload one subject that this happens in to our ftp site? >>> >>> cheers >>> Bruce >>> On Mon, 6 Feb 2017, Juhyoung Ryu wrote: >>> >>>> >>>> Hi FS developers, >>>> >>>> I received errors in one of steps in recon-all. >>>> I analyzed 111 individual subjects' T1 data using same method, but there >>>> are errors in only 14 subjects. >>>> >>>> >>>> >>>> Below is screenshot image in the end of recon-all.log file. I attached log >>>> files from two exemplar subjects below, also. >>>> >>>> I’d appreciate if you might help me. >>>> Juhyoung. >>>> >>>> >>>> >>> _______________________________________________ >>> Freesurfer mailing list >>> [email protected] >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> The information in this e-mail is intended only for the person to whom it is >>> addressed. If you believe this e-mail was sent to you in error and the >>> e-mail >>> contains patient information, please contact the Partners Compliance >>> HelpLine at >>> http://www.partners.org/complianceline . If the e-mail was sent to you in >>> error >>> but does not contain patient information, please contact the sender and >>> properly >>> dispose of the e-mail. >> >> >> _______________________________________________ >> Freesurfer mailing list >> [email protected] >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
