Try this version (same as version 6) https://gate.nmr.mgh.harvard.edu/safelinks/greve/mris_anatomical_stats
On 02/08/2017 04:55 AM, Clara Kühn wrote: > Hi Doug, > > thanks for your reply. I tried it out and attached the lh.aparc.pial.stats > file for you to take a look at. As far as I can tell it's still reporting the > white surface area. Or am I reading it wrong? > > Cheers Clara > > ----- Ursprüngliche Mail ----- > Von: "Douglas Greve" <[email protected]> > An: [email protected] > Gesendet: Mittwoch, 8. Februar 2017 00:15:22 > Betreff: Re: [Freesurfer] extract area.pial stats > > try > > cd $SUBJECTS_DIR/subject/surf > > mris_anatomical_stats -mgz -cortex ../label/lh.cortex.label -f > ../stats/lh.aparc.pial.stats -b -a ../label/lh.aparc.annot -c > ../label/aparc.annot.ctab subject lh pial > > > On 2/7/17 4:48 AM, Clara Kühn wrote: >> Dear FreeSurfer experts, >> >> I'm trying to extract a total Pial Surface Area like it is extracted for >> White Surface Area in the ?h.aparc.stats file. I have tried this command but >> it doesn't seem to include Pial Surface Area: >> >> mris_anatomical_stats -a $SUBJECTS_DIR/ZF1K.base/label/lh.aparc.annot -f >> $SUBJECTS_DIR/ZF1K.base/stats/lh.aparc-areapial.stats -b ZF1K.base lh pial >> >> How could I extract the total Pial Surface Area for each participant? >> >> Thank you for you help! >> Clara >> _______________________________________________ >> Freesurfer mailing list >> [email protected] >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center [email protected] Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
