Hi Rita if you have labels you can just load them each in freeview and give them each a different color
cheers Bruce On Tue, 14 Feb 2017, Rita Loiotile wrote: > Hi, > > I'm sorry for what seems like a trivial question. I couldn't find this > answer in the tutorials or old archive. > > I have statistical data in the surface that I have thresholded and > binarized to form a mask. I can load the mask as an overlay in > tksurfer. My understanding is that you need to turn files into labels > in order to change the color display in tksurfer. Is there a command > that takes in a shape/surface binary file and converts to labels? I > came across this > (https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2011-March/017668.html) > email from Doug, but it looks like I don't have mri_seg2annot in this > freesurfer release. > > More broadly, I would like to tksurfer to display several masks at > once, in different colors, using the command line. My understanding > is that I would then use mris_label2annot to put all the labels > together. When using this function, does the input order of the > labels determine the number reference for the color in the Lookup > table? What happens in the case where some labels overlap? > > Thank you in advance, > Rita > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
